G93973


Basic Information

Item Value
gene id G93973
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 28271147 ~ 28273486 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU126400
GGGAAtttctttttcacaccactgtacttATGTAAAGATATTTTTTCCATAGTAGTGGCCATTCAAGTAGACAAAGCTTATTTAACCTggaacaatacaataaataagctTAGAGAAATATCAGTATTCCTAAGTTGTGCTGAAATGGAATGTTATCttcttactgtgtgtgtgtgtttgtttaagaaaaaacagTCTGACTCTAAAAGCCAGTTCACTGATTGCTTCATACCTCATATCATTTCAGCCAACTTCATAGGTAACATtatatgattaaatattattcttattacagCCAGCACACAAGactcatcattattatttttattataatataaaacatgaattCTTCTGGTAAAGGCTGCATGTGATACTCTTTTCTGGGTGCTCTCGTGCACGCTGGCTGTCAGACAAACTGAGCCATGCCAAAGAACTTTTGTACGCTGGCTGGCAGTAATGCCAAGTGAAGCTCGCTCCTGCTTGTTGGGTCAGGACTGAGTGGTCATGTGACCTCATCCATCTCTTCCCTGGAGAGAAAGACTCCTTTGTGTGGCTTTCAATGCAGTGCAATAGGCGGAGACTGCATCACCCTCTGAAAAAGCCCAACTATGAGTTATCTGATCCAGAATCCGGTATCAGTCGTAGAACACAGACGTGAAGCTGCTCTGCTCCCTTCTTTTCTGTCAGGAGACGATGGGCTGACTGATCCAAACACCTGCATGCTGAAAGCATCCGACCAGGGAGCCAGAGATACAGGAATAGCTGATTCTCTGGTATGTATAGGTGGTGacaaaatatggtcaaattacAATGGGCAACATTGATAGTTATAATTAAAGCACCCTTTATAAATGTTAGGAAATATGgcatataataaaacattttctttttaatttgactcttaaaacttgagttTCAAATTCACCCTAAATCAATCAATACATATTTAAGGAGCACATGTTAATAAAGAATCCCCATTTAAAGGCACTATAATATTTGGGacatagttgtttttttttttttttttttttttttttttttactgatatttGATTAAACATACTCTGGTGTGTTTAACTGCttcaggagtgcaggcataaaacTTTTAATAACATCAAGTCCTAGTTTTAAGCCTTAGGTTATTTTAGGACTgctacatttttgtttgtttgttttaaagaaaccATGATAAAGCAGAGAAACATGAATCAAAAAGCAAAAGAAGGCCAAATCCAACTGATTAGTATATTATTAAGGAGAGTAACTGGTGAGCTTGGTAACATAAAGGAACTGGTAGGCCAAGGAAAACCTCGAGAAACCTCAAAAACCTCAAAAAACGTGTCAGGAGACAGGTATTGCTTTGACAGAAAGAGCCTTTTTATGAATGAAGGGGTTTCTCTATTTTTGCACATGACCAGTGGTGGATAAGCTACAGAAACTGTGTACTTAACTTAAATCAAAAAGTACCAAAAGCCTGaaaatgtacctcagcattgAATTGTTCAAGTACCACAATATGGTatgacttattgtgacttatTAGATCCTATTATACTTTTTTGTAaccaaactataaaaaaaactaaagttacTTCACTAGTTGACTAGTTGAAACAACTCTGGTGTTGCTATTAAGTCACATTAATAAAATCTCATCTCAATTAGTCTGAACCTGATGTCTATTAAAACGTTCATAAGCACAAAACACTAAGGCaagcagcttaaaaaaaatagcaaaattttatactgtcatttttggttgatggcttgtaatcattcatcttcctcttgattattttccagagttttttggtattttttttttaagtggtctctattttttcccagagctgtatatattccaTTAGTTACAAAGGCTGTTAAACTGTACACTTGCACAAGATGTGCAACAGGTCAAAACAACAGTGTGTATGCTGTAACCTGACCAGTTTACTTGCCttgtgcttctttagttttttttttttgtttgtttgttttaaagaaaccATGATAAAGCAGAGAAACATGAATCAAAAAGCAAAAGAAGGCCAAATCCAACTGATTAGTATATTATTAAGGAGAGTAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126400 True 2089 lncRNA 0.35 2 28271147 28273486

Neighbor

gene id symbol gene type direction distance location
ppp4r1 ppp4r1,LOC106579644 coding upstream 2434 28242217 ~ 28268713 (+)
LOC103040072 LOC108432760 coding upstream 44990 28212824 ~ 28226157 (+)
LOC103043264 LOC107698705,LOC107728997,LOC108276921,LOC108432759 coding upstream 89014 28163816 ~ 28182133 (+)
zbtb14 zbtb14,LOC107698704 coding upstream 107895 28159733 ~ 28163252 (+)
LOC103040375 LOC108432756 coding upstream 114555 28005198 ~ 28156592 (+)
LOC103037774 NA coding downstream 24842 28298328 ~ 28301141 (+)
LOC103037440 NA coding downstream 31048 28304534 ~ 28308650 (+)
LOC103045083 NA coding downstream 45287 28318773 ~ 28346025 (+)
LOC103026119 arhgap28,LOC108432752 coding downstream 423606 28697092 ~ 28754239 (+)
LOC103025501 lrrc30,lrrc30a,LOC103025501,LOC108432734,LOC107579084,LOC107566920 coding downstream 573013 28846499 ~ 28849413 (+)
G93961 NA non-coding upstream 112109 28158779 ~ 28159038 (+)
G93959 NA non-coding upstream 123654 28145826 ~ 28147493 (+)
G93882 NA non-coding upstream 761611 27508985 ~ 27509536 (+)
G93864 NA non-coding upstream 793957 27476918 ~ 27477190 (+)
G93856 NA non-coding upstream 834175 27436756 ~ 27436972 (+)
G93979 ssr1 non-coding downstream 12070 28285556 ~ 28317908 (+)
G93981 NA non-coding downstream 13690 28287176 ~ 28288253 (+)
G93975 NA non-coding downstream 20486 28293972 ~ 28296031 (+)
G94002 LOC108432767,LOC108271151,LOC107705358,LOC107588508,LOC104959250 non-coding downstream 92121 28365607 ~ 28370263 (+)
LOC111193367 NA non-coding downstream 160513 28433999 ~ 28437474 (+)
LOC111193309 l3mbtl4,LOC108432753,LOC107698702,LOC107570871,LOC107728988,LOC107653885,LOC106590345 other upstream 331214 27919092 ~ 27939933 (+)
G93753 NA other upstream 1322268 26948463 ~ 26948879 (+)
LOC103034726 LOC108436089 other upstream 1878712 26267493 ~ 26392435 (+)
G93185 LOC105900568,LOC101883708 other upstream 2957440 25311877 ~ 25313707 (+)
G93135 NA other upstream 3305703 24914689 ~ 24965444 (+)
LOC103021747 rheb,LOC107653878,LOC106590380 other downstream 935792 29209278 ~ 29326025 (+)
LOC103044382 NA other downstream 977547 29251033 ~ 29346842 (+)
LOC111193374 NA other downstream 982692 29256178 ~ 29256564 (+)
G94233 NA other downstream 996817 29270303 ~ 29365656 (+)
G94241 NA other downstream 1109069 29382555 ~ 29383298 (+)

Expression


Co-expression Network