G93981


Basic Information

Item Value
gene id G93981
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 28287176 ~ 28288253 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU126414
gaaaatatgaaaataatcatCAATCAATGTTATCAGCAACAAATACAAAAGACAGACTCTGTCATAGTATTGGGTTGTGTACTTTTTACACAAGTACATTAAATCTTTATTGAGATCTGCCTTTTTAAcaaaatttaacaaaaacaagcaaaagcAGATGATGCACATATTACAAAGGCATGACTGCAGTCCTGAACTTCCACAGTAGAACAATTTGACATACTCAAACAACATATAGCCCACATATAGctttatttgtctattttttcaTAGGGATGAAAGGTGCAGTTTATTTTTCAAGTTATCTTCATCCACATAAAATTACCCTTCTGTCTCTTCACACACTAGAGAAGATTTCATCAGTTGTTattatttaacagtttaaaaatgctttGTGTGCAACAGACTTGCTTGTGtcaaacattaaattatttattaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126414 True 441 lncRNA 0.30 2 28287176 28288253

Neighbor

gene id symbol gene type direction distance location
ppp4r1 ppp4r1,LOC106579644 coding upstream 18463 28242217 ~ 28268713 (+)
LOC103040072 LOC108432760 coding upstream 61019 28212824 ~ 28226157 (+)
LOC103043264 LOC107698705,LOC107728997,LOC108276921,LOC108432759 coding upstream 105043 28163816 ~ 28182133 (+)
zbtb14 zbtb14,LOC107698704 coding upstream 123924 28159733 ~ 28163252 (+)
LOC103040375 LOC108432756 coding upstream 130584 28005198 ~ 28156592 (+)
LOC103037774 NA coding downstream 10075 28298328 ~ 28301141 (+)
LOC103037440 NA coding downstream 16281 28304534 ~ 28308650 (+)
LOC103045083 NA coding downstream 30520 28318773 ~ 28346025 (+)
LOC103026119 arhgap28,LOC108432752 coding downstream 408839 28697092 ~ 28754239 (+)
LOC103025501 lrrc30,lrrc30a,LOC103025501,LOC108432734,LOC107579084,LOC107566920 coding downstream 558246 28846499 ~ 28849413 (+)
G93973 NA non-coding upstream 13690 28271147 ~ 28273486 (+)
G93961 NA non-coding upstream 128138 28158779 ~ 28159038 (+)
G93959 NA non-coding upstream 139683 28145826 ~ 28147493 (+)
G93882 NA non-coding upstream 777640 27508985 ~ 27509536 (+)
G93864 NA non-coding upstream 809986 27476918 ~ 27477190 (+)
G93975 NA non-coding downstream 5719 28293972 ~ 28296031 (+)
G94002 LOC108432767,LOC108271151,LOC107705358,LOC107588508,LOC104959250 non-coding downstream 77354 28365607 ~ 28370263 (+)
LOC111193367 NA non-coding downstream 145746 28433999 ~ 28437474 (+)
G94132 NA non-coding downstream 335947 28624200 ~ 28629831 (+)
G94145 NA non-coding downstream 367154 28655407 ~ 28655954 (+)
LOC111193309 l3mbtl4,LOC108432753,LOC107698702,LOC107570871,LOC107728988,LOC107653885,LOC106590345 other upstream 347243 27919092 ~ 27939933 (+)
G93753 NA other upstream 1338297 26948463 ~ 26948879 (+)
LOC103034726 LOC108436089 other upstream 1894741 26267493 ~ 26392435 (+)
G93185 LOC105900568,LOC101883708 other upstream 2973469 25311877 ~ 25313707 (+)
G93135 NA other upstream 3321732 24914689 ~ 24965444 (+)
LOC103021747 rheb,LOC107653878,LOC106590380 other downstream 921025 29209278 ~ 29326025 (+)
LOC103044382 NA other downstream 962780 29251033 ~ 29346842 (+)
LOC111193374 NA other downstream 967925 29256178 ~ 29256564 (+)
G94233 NA other downstream 982050 29270303 ~ 29365656 (+)
G94241 NA other downstream 1094302 29382555 ~ 29383298 (+)

Expression


Co-expression Network