RNA id: TU126352


Basic Information

Item Value
RNA id TU126352
length 820
lncRNA type sense_over
GC content 0.47
exon number 2
gene id LOC111193309
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 27919092 ~ 27939933 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGTGGCTGACTTCATCCATTCTCTCCCAGGCTGTGAAGAACAAGCCAAGCAGTTCAGAGAGGAGCAAATCGACGGCAAGGCATTCCTTCTTCTGACGCAGCGAGACATCGTGAAGATCATGAGTGTTAAGCTCGGCCCCGCCCTCAAAATCTACAATTCCATCCTGATGTTCAAGCACGCTGAGGACAGCCAATCAGCAAGCAGCGATACTAATACATGAAGTCTATGAATATGACCCCCCCCTTGAGTTGTATGTGAACACAGATGTCTACTGTATTGATGCATTCCAgcctcctcctctctccaccCCTTCCAGCCACTCAGACATAAAGGTACCCGGTAAAAGgacctccccctctctctctctctctctctctctctctctctctctcttcaaagAGGAAGTGTTCACACCTCTGCCTTTCAGGATCCAGTTTCTGTCACAACCTTCAAATCTGCCTTGAAATGTAAAAAGCAAAGGTAAGCTTAACCCATAAGCCAGCAGCAGCTCTCTATTCTCCCACAGGCTGAACCCTCTTCCTCCAtgtccctctcctcctcctcctcctcttcttaaTCATGTAATCTCCTCCTccctgcagaaaaaaagaaaactcaatgAAATGACAATCAATCAACCACAAAAGGTAACAAACAGCACAGCCAGCTTTCATAACGAGGGTTGTAACAGTAAAGGTGCTTTTTATATCAAACACAACAGTCTGAACAGCATTTGATAAGCAGGTCTCAGTCTCTGCTGCAGCATATGATTACATCGGCTGACTTTTATCCTGGGAGAGGCCCTTTGTGCTAACTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126277 lncRNA upstream 424302 27508985 ~ 27509536 (+) True G93882
TU126255 lncRNA upstream 456648 27476918 ~ 27477190 (+) True G93864
TU126247 lncRNA upstream 496866 27436756 ~ 27436972 (+) True G93856
TU126170 lncRNA upstream 639268 27267904 ~ 27294570 (+) True G93797
TU126159 lncRNA upstream 713869 27218225 ~ 27219969 (+) True G93789
TU126372 lncRNA downstream 206806 28145826 ~ 28147493 (+) True G93959
TU126374 lncRNA downstream 219759 28158779 ~ 28159038 (+) True G93961
TU126400 lncRNA downstream 332127 28271147 ~ 28273486 (+) True G93973
TU126411 lncRNA downstream 346536 28285556 ~ 28311496 (+) True G93979
TU126414 lncRNA downstream 348156 28287176 ~ 28288253 (+) True G93981
XM_007240971.3 mRNA upstream 685054 27225087 ~ 27248784 (+) True capn7
XM_007233883.3 mRNA upstream 716951 27207410 ~ 27216887 (+) True nub1
XM_022673879.1 mRNA upstream 716951 27207455 ~ 27216887 (+) False nub1
XM_007233882.3 mRNA upstream 728500 27197914 ~ 27205338 (+) True LOC103039637
XM_022673864.1 mRNA upstream 1120083 26671160 ~ 26813755 (+) False LOC103037861
XM_022673901.1 mRNA downstream 18858 27957878 ~ 27983782 (+) True tmem200c
XM_022673885.1 mRNA downstream 66178 28005198 ~ 28156592 (+) True LOC103040375
XM_022673891.1 mRNA downstream 105219 28044239 ~ 28156592 (+) False LOC103040375
XM_022673883.1 mRNA downstream 105220 28044240 ~ 28156592 (+) False LOC103040375
XM_022673889.1 mRNA downstream 105220 28044240 ~ 28156592 (+) False LOC103040375
TU126114 other upstream 984959 26948463 ~ 26948879 (+) True G93753
TU125312 other upstream 2620131 25311877 ~ 25313707 (+) True G93185
TU125228 other upstream 2968394 24914689 ~ 24965444 (+) True G93135
TU125154 other upstream 3225464 24698133 ~ 24708374 (+) True G93079
TU124347 other upstream 6581835 21275163 ~ 21352003 (+) False G92462
XR_002650484.1 other downstream 1317160 29256180 ~ 29256564 (+) False LOC111193374
TU126787 other downstream 1331283 29270303 ~ 29365656 (+) False G94233
TU126784 other downstream 1414769 29353789 ~ 29365656 (+) True G94233
TU126786 other downstream 1414769 29353789 ~ 29365656 (+) False G94233
TU126796 other downstream 1443535 29382555 ~ 29383298 (+) True G94241

Expression Profile