RNA id: XM_022673889.1


Basic Information

Item Value
RNA id XM_022673889.1
length 4606
RNA type mRNA
GC content 0.49
exon number 26
gene id LOC103040375
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 28005198 ~ 28156592 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCgcgtgtgaggtgtgtgtgcgcgcgcacaGGGCGGTCACTCAGCAGCCACCGCCTCGGGAGAGCGCAGAGCATCCATCCGCTGATAAACTCCGAGTACAGCCGGTACAGTGTGAATAACCATGACGACAGACCCGAGCTCAGAGCCAGAGGCCAAGCAGGAGCAGCCGGGGGCCGGTGCGGCTCCGCCCCACACAGCCCCGCCCCTGGAAGAACAGCTTCCTCCTGCCGCCGCCCACAGCACGCCGGTTAGAAAAGAACAGAACGGGGAGAGAGAGGCGGGAGGTGTCCCACAGGGGAAGGCGGATCAGCAGGTGGCTGAGGACGACCTCACCTCCCACAGGTCCTCCTCCAGCAAGCTCTCCAGGTCTCCAGTTAAGGTGCCCAAGAAACCCAAAAACATGCAGTGCAAAGTCACGCTCCTAGACGGCTCAGACTACACGTGTGTGGTGGAGAAACGGGATAAAGGTCAGGTGCTCCTTGACAAAGTCTGCGAGCATCTTAACCTTCTAGAGAGGGACTACTTTGGGATCACATTCCGTGATGCAGAGAATCAGAAGAACTGGCTTGACCCTTCCAAAGATATGAAGAAGCAGATTAGGGgagtCGCCTGgaatttctcctttaatgtgaAGTTTTATCCTCCTGACCCCGCTCAGCTCTCTGAGGACATCACAAGgtACTACCTGTGTCTTCAGTTGAGAGATGATGTTCTGTCCGGGCGTCTACCCTGCTCCTTTGCCACACACACGGTTCTCGGATCATACACGGTCCAGTCGGAGCTGGGTGATTTTGATCCAGACGAATATGGCACAGACTACGTCAGCGAATTCCGGTTTGCACCTCACCAGACCAAGGAACTAGAAGAGAAGGTCATGGACCTCCACAAGAACTACAAaggGATGACGCCAGCTGATGCTGAAATGCATTTCCTGGAGAATGTGAAAAAGCTGTCTATGTATGGAGTGGACCTCCATCACGCCAAGTTGGTAGGAAGCTTCTTTGAGTGCTTGTCTCCAGCTAAAGGAGAGGATTCAGAGGGGGTGGAGATCATGCTAGGAGTGTGTTCCTCAGGCCTCCTCATCTATCGGGACCGTCTGCGCATCAACAGGTTCGCGTGGCCCAAAGTCCTCAAGATCTCCTACAAGAGGAATAACTTCTACATCAAAATTCGGCCTGGAGAGTTTGAGCAGTTCGAAAGCACGATTGGCTTTAAACTCCCcaaccacagagcagctaaGAGACTTTGGAAGGTTTGTGTGGAGCACCACACTTTCTTCAGGTTGGTTTCTCCGGAAACGCCTCCTAAGAAGTTCCTGACTCTCGGTTCCAAGTTCCGCTACAGTGGCAGAACCCAGGTCCAGACACGACGAGCCAGTTCACAGATAGTTCGCCCAGCACCCTACTTTGAGCGCTCCACCAGCAAACGCTACACCATGTCCCGCAGTCTAGACGGTGCTCATCGGAGCATCCCCCAAAACACAGTGACTGTAGTCCCAGGATCTAAACCACTAACAGCTATGAATGGCACAAAACCAGCAGagaTGGGCACAGCATTGTACGGGGCTGCTAAAGGCATTGCCATGAGTGACCTCATCACCACAGTTACACCagagaagaaggtggaggagaacaaagCGGAAGAAGGAGTGGTGCTTGTAGAAAACGTTGTGGTGGTGGAGGAAGAAGACGAGACGACGAAGGCTACAGAAGTTTCACAGCCGAGTCCACCAACTCCTGTTAGACAGGACACAAGGTCAGACCAGGATGACGAGTCTGAAATGaagacacagCCCAGTTTTGTAAGGCGAATAAAAGGAGAAAATGTGTTTATCAGACATAGCAAGCTGATGCTGGAGGAGGTGGAAAAAACACCTGAAGAGCTTCTCAAACACCAGACCAACATTAGTGAGCTGAAGAGATCTTTCCTGGAGGGAGGTGCTGATAAGTCAGGCCTGACGGAGTGGGAGAAACGTCTTTCTTCATCCCCCCTGCGATCCCCCCGGTTGGACGAGGCCCCTATGATTGAACCCCTAGTGCCTGAGGATACCAAAGAGGACTCAAAAGCAGTAGgtgagaaggaggaggaggaggctgcTGGAGGAACAGAAGTACAGGACAGCCTTGAGGACAGGAAAGTAGATGTGGAGTCTGATGGTTGGGTAATTATAAACAAGGTTCCTCCTAAGGTTCCTCCTAAAGTTCCTCCTAAGGTaccagaaaagaaaaacatagcCAGCTACAAACTAGTGAGCGTTACTAGCACTGTAACTGCAGATGAGGTTCTGGGGGATATAGCTCTCAAACCTCCAGAGGAAGATGTGGAGAAGGCATCAGCCAAGGAAGAAGAGATTGGCAAGTCGTACGACACCACCTCGGGGAAGATAGTTATCGTGACCGCTTCAGATGGTGACCTCCCGTCCCCGTCGCTTCCTGCAGAGAAGAAAAAGCTGTTAGACCAGAGCAGCACTGCAGTTTCGGAAGGGTATGAGGCTGCAGCCATCATAGCTACAGAAACCATTACAACACCAGTGATCACCATAAAAGAAGCCAGGACCCCGTCTCCCACCGAACCTACAGGAGACGTTGTGAGGACAGTGGTGGCCATCCGCTCCAGTGAGGAAATTGGGGAGGAGCAGAGGAAAGAGTTGAGGCTGCTAACTGACCCTTCGCTGAGGGGTGGTGCCCCACCAACGCCAAGATCTCCCCTCAGGTCCCCACTAAGATCTCCTCTCAAATCTCCAGCGAAGACGCCGGGGGATCTCAGCCCCGGCCCGAGCTCCTATCTGACAAAAACTCCACCAACAGCCAGAGTGCCTAAGCCCACATTCGATGAGATGTCTCCAGAGCTCACTGCTTTACTGCAGTCTGCTCGTGACCAGATCAGCACGCGCAGCTGGGGACCATCATCTCCAACCTCTGCTCATAATCCAGCCGTCATTAAGACATCTAAAGGTCCAGGCAGGAGTATTCTCGAGACTGCAGATACGGCCAAGTCAAAGGATGAGGAGCAGGTGGCCAGTAAACAGCAGCTGTCTTCACTGCTACAGACAGAGGTTGTAACCTTTGGTGGAGCATTGTCTGACGAAGCAGAGAGGCTGGCGCGGGAAATGCCAGTGATCCACACAGAAATGAAGACTATAACATACGAGGCCCTGCAGGGTGAAACAGATGGTGACACAGAGCCAGGGATTCTGATGAGCGCTCAGACCATCACATCTGAAACCACTAGTACAACCACAACAACACATATCACTAAGACTGTGAAGGGAGGTATCTCGGAAACGAGGATTGAGAAGAGAATTGTCATCTCGGGGGATGCAGACATCGACCATGATGAGGCCCTGGCTCAGGCCATTAAAGAAGCCAAAGAGCAACACCCCGACATGTCAGTGACCAAAGTAGTGGTCCACAAAGAGACTGAAATCACGCCAGAAGAGGGCGAGGAGTGAAGAAGGAATAATGTCTCATCACACTCCCTGGCGAAACACCTCGTTTACACCACGCAGTATGAAGGACGCTTTGGAGAAGTCTCCCACGGAAACAGCACCACAAGCGGAGCAGTTGATAATACTTCAGTTTTGCAGCGCTGGAGCAAACTCTCGCAGAAACATTCACACATGCTCACACTCTCCAACACACGCTTACAGAACTACCGGGCAGCCTGGTCCAGCACTGGATCACTGATATTGCATGACAAGGGAACaactgcttttctttttcttatttattattttttttgtaaagagaagaaaaaaagatatatagcTTTTAGAACTCTATTACAGCAGTGTACTTTTCAGTCTACCCTGCGCTCTTCACCTGAAGGGAGGAGGAATGTATCGGATGAGTGTTCTGAAATAGTACTGAATCAAAAAACAAATAcccacatttaatttattagaaTCCAGCGCAGTatgagtaataaaaataataataacagtaataataataatactagaCTGTATCTGTAAGAGCACACAGTATTTAACCATGCAATAGGTGTGCCGTTCATGCCGCCAGTCTCCACGTCCTGATCTCGTCAACCCTCCCTCTGCCTCTGATGTGCTCATGTTGAACGTACTTTATCTGAATGAGAATGTGAACGATTCACTCATTTGCTTTGTAGATCATGCATAGTAGAAGAAACgtattctgttgtttttagttgaattaaatgtgcatttttatgttttaccctCAAATTGTCTGACTGAACAGCAGATGTTGGCAATTTTactgtctgatttttttttccttccaaaAAAGAAGACTGGCACTGTGACCTCATTTGTCACTGATTCAGAGTCCTTGCTAAACAAAGCGATGTCTTTGCAAGGTGACTGCTGCCCCAGCCTCACGTTTTAAGTTTGAAATCATTTCCCAAATTGTCTATGCCTAGAGTGGCATACCTGAGCCTTAAATTGTATAAACTGGATAGAGAATCTAAAATATCTCCAGTTATGTGTTGTGCCcttgttttattattctaattattgttTGTCATtagcctgtgtgttttttacacCACCATCCTGTTGTACGCTGCAGTCCATGTTGAATGTGTTTCCCACATGAGCTCAAATAAAATGGCAAATATATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126352 lncRNA upstream 105220 27933838 ~ 27939020 (+) False LOC111193309
TU126277 lncRNA upstream 534704 27508985 ~ 27509536 (+) True G93882
TU126255 lncRNA upstream 567050 27476918 ~ 27477190 (+) True G93864
TU126247 lncRNA upstream 607268 27436756 ~ 27436972 (+) True G93856
TU126170 lncRNA upstream 749670 27267904 ~ 27294570 (+) True G93797
TU126374 lncRNA downstream 2187 28158779 ~ 28159038 (+) True G93961
TU126400 lncRNA downstream 114555 28271147 ~ 28273486 (+) True G93973
TU126411 lncRNA downstream 128964 28285556 ~ 28311496 (+) True G93979
TU126414 lncRNA downstream 130584 28287176 ~ 28288253 (+) True G93981
TU126402 lncRNA downstream 137380 28293972 ~ 28296031 (+) True G93975
XM_022673901.1 mRNA upstream 60458 27957878 ~ 27983782 (+) True tmem200c
XM_022673368.1 mRNA upstream 104307 27919092 ~ 27939933 (+) True LOC111193309
XM_007240971.3 mRNA upstream 795456 27225087 ~ 27248784 (+) True capn7
XM_007233883.3 mRNA upstream 827353 27207410 ~ 27216887 (+) True nub1
XM_007236002.3 mRNA downstream 3141 28159733 ~ 28162730 (+) False zbtb14
XM_007236004.3 mRNA downstream 3146 28159738 ~ 28163252 (+) True zbtb14
XM_022673902.1 mRNA downstream 3452 28160044 ~ 28162730 (+) False zbtb14
XM_022673907.1 mRNA downstream 7224 28163816 ~ 28182133 (+) False LOC103043264
XM_022673908.1 mRNA downstream 7224 28163816 ~ 28182133 (+) False LOC103043264
TU126349 other upstream 105220 27919594 ~ 27939020 (+) False LOC111193309
TU126350 other upstream 105220 27919594 ~ 27939020 (+) False LOC111193309
TU126114 other upstream 1095361 26948463 ~ 26948879 (+) True G93753
TU125312 other upstream 2730533 25311877 ~ 25313707 (+) True G93185
TU125228 other upstream 3078796 24914689 ~ 24965444 (+) True G93135
XR_002650484.1 other downstream 1099588 29256180 ~ 29256564 (+) False LOC111193374
TU126787 other downstream 1113711 29270303 ~ 29365656 (+) False G94233
TU126784 other downstream 1197197 29353789 ~ 29365656 (+) True G94233
TU126786 other downstream 1197197 29353789 ~ 29365656 (+) False G94233
TU126796 other downstream 1225963 29382555 ~ 29383298 (+) True G94241

Expression Profile