G94589 (arf2b,LOC108263862,LOC108429183,LOC107677191,LOC107554546,LOC105892790)


Basic Information

Item Value
gene id G94589
gene name arf2b,LOC108263862,LOC108429183,LOC107677191,LOC107554546,LOC105892790
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 30745768 ~ 30750248 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU127259
TCCAGCAGTTTGTGGTGGGGCTGGGAAGGGAATGTTGGGTGGTCTGTGGTTGAGCTTGAGGTCGTGCTGCCACCGGACGTGGGGGTTAGAGTAGAGTCATGAACCGAGAGTCAGATTAACTTCTCTACTTTTACACTCTCATGCAAATTTTACACCAGAAGCAGGTAAAAAAGCATAATTTCCCATTTTCAAAATGAGGCAGAGGACAAAGAAAGATGGAGCCTGATCTTCCCAACCTGATACAGGTTACAATGCCACTTTTCCAACACACCAGGGCAAATTCACCGTTTCTTGTTTATATACTAGTGCAATAGAAAATGCCGCATGTCCATAACACTAGTGGCAGGTTTTTGTTAGGGTTATTGCCTATAACAGACAACATGGAGGAACCttcatttacactgttctttaaaagaaaaaacaaaatggaGAACAAGGAGAAAATACTTGAGCAGAAACTGAAAGCTGTGTGAGCCACCTTACAGGTTTGACGGGTGATTTAAAGGAAGGATATGTATATAAAAGGCACACCAGAGTCATCCTCAATtcaagcagacagacagaaacctTCATACATggacacgcacacaaacacattctcTTTCACATGCATACTATAAGTAAACATACACTCAAAATCATACAGTGTGTGCATCCGTCTCCCAAACACATTGTGAGGCAGCAAAGTCTAAACCCATATGGTGGAGGACTCAGAGGTGAGGGAGGTGGAAATGTATCAAGATCAGTCAAGGTTTAGGCTAAAGCTGCCTCCATGTGTGTCTCACTCTGACACATACATGCAGCCAGACACTCAGAGGCCGGTGGAATGGCTCATTTCTGGTTTTTGAGCTGGTTGGAGAGCCAGTCAAGCCCCTCGTAGAGGCCGTCGCCGCTGGTTGCACACGTGGCCTGGATGTACCAGTTGCGATGGCGCAGTGCGTGAAGGCCCAGTTTATCCGTGATCTCGGCAGCATTCATTGCATTGGGCAGGTCCTGTTTGTTTGCAAAAATCAGGAGAACAGCATCACGGAGCTCATCTTCTGCCAACATTCTTGTTAACTCCTCCCTCGCTTCATTTACTCGTTCTCTGTCATTGCTGTCCACTACAAAGATCAGGCCTTGTGTGTTCTGAAAGTAGTGCCTCCACAACGGTCTGATTTTGTCCTGACCACCGACATCCCATACTGTAAAACTGATGTTCTTATACTCTACTGTCTCAACATTAAAACCGATTGTGGGGATGGTGGTGACAATCTCTCCCAGCTTGAGTTTGTATAAAATGGTGGTCTTTCCAGCTGCGTCCAGCCCCACCATCAGAattctcatctccttcttcccaaacaaacttttaaaaagaTTGGCAAAGACATTCCCCATCTTCTCAACTCTGAGTGACAAACAtgggagacagagacagaaactgAAAATTATAATAGAGAACCACACTTATCCTCTCTTTTAGGGAGGAACACTaagatcaataaaatatttattttgtaataatttgtatAATAAAATGGATTATTTTCAGAGTGAATTATCCTTCCATA

Function

symbol description
arf2b Predicted to enable GTP binding activity. Predicted to be involved in endocytic recycling and intracellular protein transport. Predicted to be active in cytoplasm and plasma membrane. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARF1 (ADP ribosylation factor 1).

NR:

description
PREDICTED: ADP-ribosylation factor 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127259 True 1550 lncRNA 0.44 4 30745768 30750248

Neighbor

gene id symbol gene type direction distance location
LOC103023025 fmnl1 coding upstream 184957 30482289 ~ 30560811 (+)
iglon5 iglon5,zgc:110372,LOC107671460,LOC107707642,LOC107733024,LOC106582734 coding upstream 595252 29774260 ~ 30150516 (+)
LOC103030628 NA coding upstream 1158550 29537086 ~ 29587218 (+)
LOC103037974 LOC103037974,LOC108410974 coding upstream 1329656 29408513 ~ 29416112 (+)
LOC111193298 LOC108410972 coding upstream 1359582 29377574 ~ 29386186 (+)
LOC103022402 NA coding downstream 66369 30816617 ~ 30851185 (+)
LOC111193310 NA coding downstream 120488 30870736 ~ 30875018 (+)
asb10 asb10,LOC107677219,LOC107717248,LOC107732081,LOC107555532 coding downstream 530286 31280534 ~ 31294974 (+)
gbx1 gbx1,LOC107101697 coding downstream 547131 31297379 ~ 31300396 (+)
LOC111193377 nbeal2,LOC107685597,LOC107743212,LOC107596634,LOC107752840,LOC107581539 coding downstream 807398 31557646 ~ 31564077 (+)
G94586 NA non-coding upstream 20918 30723080 ~ 30724850 (+)
G94555 NA non-coding upstream 234240 30420002 ~ 30511528 (+)
G94554 NA non-coding upstream 326137 30418878 ~ 30419631 (+)
G94547 NA non-coding upstream 345426 30399024 ~ 30400342 (+)
G94540 NA non-coding upstream 357753 30387399 ~ 30388015 (+)
G94598 grn non-coding downstream 36939 30787187 ~ 30790979 (+)
G94650 NA non-coding downstream 59706 30809954 ~ 30810229 (+)
G94658 NA non-coding downstream 99562 30849810 ~ 30861663 (+)
G94660 NA non-coding downstream 103590 30853838 ~ 30857500 (+)
G94681 NA non-coding downstream 165206 30915454 ~ 30915682 (+)
LOC103021358 NA other upstream 284040 30451578 ~ 30461728 (+)
hamp hamp other upstream 1114734 29626575 ~ 29631034 (+)
G94241 NA other upstream 1362470 29382555 ~ 29383298 (+)
G94233 NA other upstream 1380112 29270303 ~ 29365656 (+)
LOC111193374 NA other upstream 1489204 29256178 ~ 29256564 (+)
LOC103032422 atg9b,LOC107717223,LOC102789368,LOC105893796,LOC107599667 other downstream 226938 30977186 ~ 31001046 (+)
LOC103022800 zgc:92591,LOC103022800,LOC108429172,LOC108260489,LOC107690974,LOC107554735,LOC105895240,LOC105019623 other downstream 514618 31264866 ~ 31266990 (+)
LOC103045891 nradd,LOC108411964,LOC107581538 other downstream 839699 31589947 ~ 31610978 (+)
c10h8orf88 cunh8orf88 other downstream 946705 31696953 ~ 31709308 (+)
LOC103041301 LOC108411965,LOC107752846,LOC107672999,LOC107685619,LOC107743234 other downstream 958982 31709230 ~ 31720782 (+)

Expression


Co-expression Network