G94598 (grn)


Basic Information

Item Value
gene id G94598
gene name grn
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 30787187 ~ 30790979 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU127269
ACTGGGCTGCCTGATGGGAACTCTCATCACCCAGTCTAGCGTGTGTGTCTTGTTAACACATTTGGAATGTTCTAGATCACACAATGTTCCTTCATGACAGCAATGCAGATGATCTGAGCAGCACTCTGCATTGGGGAGTGGGCAGCATCCGTATCCTCCTGATGGGGTTTGGCAGCAGGTGTTTCCATCATCACACATTCCTCCATCAGGGCAGATAAGAGCACTGCacccactcaacacacacaccaacacccacacactcttacgcatCGCTGCGAGTGTGTGATGATCTGGTTAGGTAAATGTGCTAGAAAATGTTACACATTCAGATGTAAAGCCAAACACGTGTCTTTTGTCcCAGAACACAGTCAGAGAAAACACTCACACAcgatttaaaaccatttaacgCTAAAAGTCCTCAGAGCTGAACTGAACA

Function

symbol description
grn Enables chaperone binding activity. Involved in several processes, including lysosomal lumen acidification; negative regulation of respiratory burst involved in inflammatory response; and positive regulation of lysosome organization. Located in several cellular components, including Golgi apparatus; late endosome; and lysosomal membrane. Implicated in dementia (multiple); neurodegenerative disease (multiple); and neuronal ceroid lipofuscinosis 11. Biomarker of Grn-related frontotemporal lobar degeneration with Tdp43 inclusions; atherosclerosis; autistic disorder; bipolar disorder; and neurodegenerative disease (multiple).

NR:

description
PREDICTED: granulins

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127269 True 436 lncRNA 0.47 4 30787187 30790979

Neighbor

gene id symbol gene type direction distance location
LOC103023025 fmnl1 coding upstream 226376 30482289 ~ 30560811 (+)
iglon5 iglon5,zgc:110372,LOC107671460,LOC107707642,LOC107733024,LOC106582734 coding upstream 636671 29774260 ~ 30150516 (+)
LOC103030628 NA coding upstream 1199969 29537086 ~ 29587218 (+)
LOC103037974 LOC103037974,LOC108410974 coding upstream 1371075 29408513 ~ 29416112 (+)
LOC111193298 LOC108410972 coding upstream 1401001 29377574 ~ 29386186 (+)
LOC103022402 NA coding downstream 25638 30816617 ~ 30851185 (+)
LOC111193310 NA coding downstream 79757 30870736 ~ 30875018 (+)
asb10 asb10,LOC107677219,LOC107717248,LOC107732081,LOC107555532 coding downstream 489555 31280534 ~ 31294974 (+)
gbx1 gbx1,LOC107101697 coding downstream 506400 31297379 ~ 31300396 (+)
LOC111193377 nbeal2,LOC107685597,LOC107743212,LOC107596634,LOC107752840,LOC107581539 coding downstream 766667 31557646 ~ 31564077 (+)
G94589 arf2b,LOC108263862,LOC108429183,LOC107677191,LOC107554546,LOC105892790 non-coding upstream 36939 30745768 ~ 30750248 (+)
G94586 NA non-coding upstream 62337 30723080 ~ 30724850 (+)
G94555 NA non-coding upstream 275659 30420002 ~ 30511528 (+)
G94554 NA non-coding upstream 367556 30418878 ~ 30419631 (+)
G94547 NA non-coding upstream 386845 30399024 ~ 30400342 (+)
G94650 NA non-coding downstream 18975 30809954 ~ 30810229 (+)
G94658 NA non-coding downstream 58831 30849810 ~ 30861663 (+)
G94660 NA non-coding downstream 62859 30853838 ~ 30857500 (+)
G94681 NA non-coding downstream 124475 30915454 ~ 30915682 (+)
G94682 abcb8,LOC107732078,LOC107677282,LOC107599668 non-coding downstream 127702 30918681 ~ 30963271 (+)
LOC103021358 NA other upstream 325459 30451578 ~ 30461728 (+)
hamp hamp other upstream 1156153 29626575 ~ 29631034 (+)
G94241 NA other upstream 1403889 29382555 ~ 29383298 (+)
G94233 NA other upstream 1421531 29270303 ~ 29365656 (+)
LOC111193374 NA other upstream 1530623 29256178 ~ 29256564 (+)
LOC103032422 atg9b,LOC107717223,LOC102789368,LOC105893796,LOC107599667 other downstream 186207 30977186 ~ 31001046 (+)
LOC103022800 zgc:92591,LOC103022800,LOC108429172,LOC108260489,LOC107690974,LOC107554735,LOC105895240,LOC105019623 other downstream 473887 31264866 ~ 31266990 (+)
LOC103045891 nradd,LOC108411964,LOC107581538 other downstream 798968 31589947 ~ 31610978 (+)
c10h8orf88 cunh8orf88 other downstream 905974 31696953 ~ 31709308 (+)
LOC103041301 LOC108411965,LOC107752846,LOC107672999,LOC107685619,LOC107743234 other downstream 918251 31709230 ~ 31720782 (+)

Expression


Co-expression Network