LOC103045891 (nradd,LOC108411964,LOC107581538)


Basic Information

Item Value
gene id LOC103045891
gene name nradd,LOC108411964,LOC107581538
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 31589947 ~ 31610978 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU127646
agctggaAGTCGTTTCAGCAGAAGAAGGCTCTGGGTAAGGCTCGAGCTGGAGAGCTGAATAACGTGGCTGAGGGGGAGAAGCTCCACAGCGACAGCGGCGTGTTCCTCGACTCCCACAGCCTGCAGGACAGCCAGCCCAGCAAAGGCAGTAAGCGGGACAGCAAGCAGGACACGCGGCTGTACATAAACCTGCCCCCTCACCGGcaggaggagctggagaagcTGCTGGAGGAGGGCAGCGGGCGGAGCTGGAGGCAGCTGGGCGGAGCTCTGGGGTACGAGCCGGAGCGACTGGACGTTTTCGGGCGCGGTCTGGACCCTGTTCACACGCTGCTGACGGACTGGTCCCAGCAGGACGGCTCCACGCTGGGTCTGCTGTGCTCCGCCCTCGCCCGCATTGAGCGGCACGATGTGGCCCGGGCCCTCACCGCGCCCACACAGGGCCTGTCGGTGGTCTGAACGCCGCCGGGACACTTCTCTAAAGACACGTTTCCACTGCCAGAAGCTTTCAGGAGCTCAGGAACATCCAGAGAAACAGCTTCTCCACAGCGACAACCAGGACCCAGGATCACTTCTTACTCCAGAACCGATATCCTGTGGACCAGGACACACTAGGGATGGAGACTTGCTGTGCTAAACGTCTTCGATTGGTCTTCGATATTTTCCttgcttttttattgtaatgtgtTTGTAAAGTGTGTATGCTTTGCTCAAGTCTCAGAGTGTCTTTAAGTGTTTTTCACCAAAGTTCAATTAATTAAGTGATGTTACAAAAACAAAGGTGTTTACTTATAGCCAACCAATCAGAAAACagttcagtttagctccacctagGGGTGTCACAACACCACTAAGAATATCTGAAATTCTTAAGATTCTTTATACCCATTTTAATAGGACTACAAACATTAAGCAGTtaaattaagatattttaacatgaatacctgcttaaattgttttttttatagtattaaaaacactgtcatatttataaaatctgggtaaaatacaagttacattttttaatccaatcagaacagtggaatcTAATGATAAAGTTCAACACTATgtagtgggtggggtttaaacacaattcTACGTGAACCACTTCTTACACCAATTTTTATTTGCAAcctagtaataaaaaaaatacagttttttttttttaaatcaatacagTGCTGCAAAACAAGATGTCATGAAATCACACAGTATAATACTGACATTTTATTCTACCCAAGTGGTTTCAATACTTAAAACCAGTAAATGGACATATTTCAACATGAACACTGTGCAGAATAATTTTGTGGGCTAATGTCACTGGTTATGAGCCATTGCATAGTTAGCCTAAACAAGCTAATTAtagccttttttttactttagcatTTCGCAACATCATCATTTCAAGTGGTACTAAGGTCTTGTGACATTCCTTATGCTGCCCTTCTAGTTTTATTAAGTTTAAAACTATAAGGAGTATTAGGAGTGTTCGTCACAGGTCCTGTTATCAGTGCATCCCAGTGAAATAACAGATCAGAGCTGAAATTGATCAGAACTCCGGTGATGAGAGCAAGAGAAGTGGGCCAACCCAGATACAGTACCTGAGCTCCAGTCGCATCATCCTCATCCTCTGGATTTCATCCTCGTACTCAAGAAGGACTCAACATTTTGTCATCACTGAATTTCAGTCAGCGTGTGAAACACTTAAGGTGGAAACCtgctttttaaggtggaaatgtTCTGTTTACATGGACTTTGCGAGGAAAGAGAGCATAGCACTGCTTGATGTGGGAGCGCGAGGGAATGCTGAGCTTCCTCTGGACTCTGAGAAACGCTGAGAGATAAACCCCAAACCGGGTGATTTTTGTACTTACCCAAGTGCCTTCCAACTTTGTAAAGGACAACTCCACCAATtctacttaaatatctgcattattaaacagtaaatatgAGAACAGA
>XM_022673377.1
acacacactcactcacacacacacttacacagtctctctctctcacacacacttacacacagaagctctctctcactctccggCTGTGTCTGATGGGAGGAGGGCTCTCGGGCGGAGGGATTATCGGGGAGTTTCGGTGAAGGTAAAGTTCGGCTCGGCTGAGCTGCGCGGAGCTCCGGCTGCAGCGGTTCCGAACAGGCGCAGAAAGCCAGCGAGCAGAGAGCGGGTCCGGGAGGTTCTGGAGCATGGAGGTTCTGCGGTTCTGCCTCTACTGTTTAGTAATAAAGgtaGTAGTGGGCGATGAGTGTGTTAGCATGCGCTTCACACGCCGGGGCGAGTGCTGCAGCCTGTGCCCGGCGGGTACCGGAGTGATATCTGAGTGTGGCCCACAGAACACCAAGTGCCAATCATGCCAAGATGgtgtgaCGTTCTCAGACTCTGAAGGTCTCTCCGCGTGCAGGGCGTGTGCCCGCTGTCCCCCGGGCATCCCCCAGCTGGCGCGCTGCACCCTGACCCAGGACACACACTGCGACTGCGGTGAGGGTTTCTTCCTCTGGCGGGACGGGAACAGCACGGAGGGCCGCTGTGCCccctgcagtgtgtgtgagcgtgggGAGGGGGTGACCCGCCTCTGTGGAGCTGCAGGAAACACCGAGTGCCAGCCTTGCCCGCCGGGCACCTACTCGGAGGTGCGGAGCACCACCCAGACCTGCACGCCCTGCTCCCGCTGCGGAGACGATGAGGTGAACATCCGGCCCTGCCAGCCCAACTCGGATACCCTCTGCATGCGTGAGTATTCACACAGTTCACGCCTCATATTTACACTTACACTTAAAATCTTATATCCTGATTCACTTTATCAGGATTCAtgtggtgtgtgtgtgtgtgttagctggaAGTCGTTTCAGCAGAAGAAGGCTCTGGGTAAGGCTCGAGCTGGAGAGCTGAATAACGTGGCTGAGGGGGAGAAGCTCCACAGCGACAGCGGCGTGTTCCTCGACTCCCACAGCCTGCAGGACAGCCAGCCCAGCAAAGGCAGTAAGCGGGACAGCAAGCAGGACACGCGGCTGTACATAAACCTGCCCCCTCACCGGcaggaggagctggagaagcTGCTGGAGGAGGGCAGCGGGCGGAGCTGGAGGCAGCTGGGCGGAGCTCTGGGGTACGAGCCGGAGCGACTGGACGTTTTCGGGCGCGGTCTGGACCCTGTTCACACGCTGCTGACGGACTGGTCCCAGCAGGACGGCTCCACGCTGGGTCTGCTGTGCTCCGCCCTCGCCCGCATTGAGCGGCACGATGTGGCCCGGGCCCTCACCGCGCCCACACAGGGCCTGTCGGTGGTCTGAACGCCGCCGGGACACTTCTCTAAAGACACGTTTCCACTGCCAGAAGCTTTCAGGAGCTCAGGAACATCCAGAGAAACAGCTTCTCCACAGCGACAACCAGGACCCAGGATCACTTCTTACTCCAGAACCGATATCCTGTGGACCAGGACACACTAGGGATGGAGACTTGCTGTGCTAAACGTCTTCGATTGGTCTTCGATATTTTCCttgcttttttattgtaatgtgtTTGTAAAGTGTGTATGCTTTGCTCAAGTCTCAGAGTGTCTTTAAGTGTTTTTCACCAAAGTTCAATTAATTAAGTGATGTTACAAAAACAAAGGTGTTTACTTATAGCCAACCAATCAGAAAACagttcagtttagctccacctagGGGTGTCACAACACCACTAAGAATATCTGAAATTCTTAAGATTCTTTATACCCATTTTAATAGGACTACAAACATTAAGCAGTtaaattaagatattttaacatgaatacctgcttaaattgttttttttatagtattaaaaacactgtcatatttataaaatctgggtaaaatacaagttacattttttaatccaatcagaacagtggaatcTAATGATAAAGTTCAACACTATgtagtgggtggggtttaaacacaattcTACGTGAACCACTTCTTACACCAATTTTTATTTGCAAcctagtaataaaaaaaatacagttttttttttttaaatcaatacagTGCTGCAAAACAAGATGTCATGAAATCACACAGTATAATACTGACATTTTATTCTACCCAAGTGGTTTCAATACTTAAAACCAGTAAATGGACATATTTCAACATGAACACTGTGCAGAATAATTTTGTGGGCTAATGTCACTGGTTATGAGCCATTGCATAGTTAGCCTAAACAAGCTAATTAtagccttttttttactttagcatTTCGCAACATCATCATTTCAAGTGGTACTAAGGTCTTGTGACATTCCTTATGCTGCCCTTCTAGTTTTATTAAGTTTAAAACTATAAGGAGTATTAGGAGTGTTCGTCACAGGTCCTGTTATCAGTGCATCCCAGTGAAATAACAGATCAGAGCTGAAATTGATCAGAACTCCGGTGATGAGAGCAAGAGAAGTGGGCCAACCCAGATACAGTACCTGAGCTCCAGTCGCATCATCCTCATCCTCTGGATTTCATCCTCGTACTCAAGAAGGACTCAACATTTTGTCATCACTGAATTTCAGTCAGCGTGTGAAACACTTAAGGTGGAAACCtgctttttaaggtggaaatgtTCTGTTTACATGGACTTTGCGAGGAAAGAGAGCATAGCACTGCTTGATGTGGGAGCGCGAGGGAATGCTGAGCTTCCTCTGGACTCTGAGAAACGCTGAGAGATAAACCCCAAACCGGGTGATTTTTGTACTTACCCAAGTGCCTTCCAACTTTGTAAAGGACAACTCCACCAATtctacttaaatatctgcattattaaacagtaaatatgAGAACAGA

Function

symbol description
nradd Predicted to enable coreceptor activity; death receptor activity; and nerve growth factor binding activity. Predicted to be involved in Rho protein signal transduction. Predicted to act upstream of or within apoptotic process and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127646 False 1959 lncRNA 0.44 2 31608831 31610978
XM_022673377.1 True 2849 mRNA 0.49 5 31589947 31610978

Neighbor

gene id symbol gene type direction distance location
LOC111193377 nbeal2,LOC107685597,LOC107743212,LOC107596634,LOC107752840,LOC107581539 coding upstream 25870 31557646 ~ 31564077 (+)
gbx1 gbx1,LOC107101697 coding upstream 289551 31297379 ~ 31300396 (+)
asb10 asb10,LOC107677219,LOC107717248,LOC107732081,LOC107555532 coding upstream 294973 31280534 ~ 31294974 (+)
LOC111193310 NA coding upstream 714929 30870736 ~ 30875018 (+)
LOC103022402 NA coding upstream 738762 30816617 ~ 30851185 (+)
LOC103040469 NA coding downstream 54369 31665347 ~ 31682452 (+)
LOC103040159 NA coding downstream 75476 31686454 ~ 31692913 (+)
LOC103040991 LOC103040991,LOC108411963,LOC108267159,LOC106597001 coding downstream 112257 31723235 ~ 31733780 (+)
LOC103041602 LOC108411962,LOC108267169 coding downstream 125828 31736806 ~ 31743161 (+)
ankib1 ankib1,ankib1b,LOC107685566,LOC107596628,LOC107743183,LOC107752829,LOC107673016,LOC107581531 coding downstream 148932 31759910 ~ 31805681 (+)
G94833 NA non-coding upstream 1882 31584967 ~ 31588065 (+)
G94818 NA non-coding upstream 42727 31546753 ~ 31547220 (+)
G94721 agap3 non-coding upstream 273990 31311374 ~ 31315957 (+)
G94707 NA non-coding upstream 284971 31198726 ~ 31304976 (+)
G94699 abcb8,LOC107677282,LOC107599668,LOC107732078 non-coding upstream 622344 30964737 ~ 30967603 (+)
G94845 LOC108411960 non-coding downstream 26976 31637954 ~ 31638685 (+)
G94865 NA non-coding downstream 197781 31808759 ~ 31812080 (+)
G94904 NA non-coding downstream 239826 31850804 ~ 31851336 (+)
G94907 NA non-coding downstream 268681 31879659 ~ 31879998 (+)
G94915 NA non-coding downstream 313854 31924832 ~ 31945068 (+)
LOC103022800 zgc:92591,LOC103022800,LOC108429172,LOC108260489,LOC107690974,LOC107554735,LOC105895240,LOC105019623 other upstream 322957 31264866 ~ 31266990 (+)
LOC103032422 atg9b,LOC107717223,LOC102789368,LOC105893796,LOC107599667 other upstream 588901 30977186 ~ 31001046 (+)
LOC103021358 NA other upstream 1128219 30451578 ~ 30461728 (+)
hamp hamp other upstream 1958913 29626575 ~ 29631034 (+)
G94241 NA other upstream 2206649 29382555 ~ 29383298 (+)
c10h8orf88 cunh8orf88 other downstream 85975 31696953 ~ 31709308 (+)
LOC103041301 LOC108411965,LOC107752846,LOC107672999,LOC107685619,LOC107743234 other downstream 98252 31709230 ~ 31720782 (+)
G94917 NA other downstream 406639 32017617 ~ 32017902 (+)
G94980 NA other downstream 640796 32251774 ~ 32324589 (+)
G95409 NA other downstream 2156544 33767522 ~ 33773312 (+)

Expression


Co-expression Network