G41400


Basic Information

Item Value
gene id G41400
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9874112 ~ 9874395 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55686
ttggcccgtttttctgcgctagaaatgtgcactctctccgctttaagactctttggcctgtttttctgcgctagaaatgcgcactctctctgcttttagactctttggcccgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcctgtttttctgcgctagaaatgcgcactctctctgcttttagactctttggcccgtttttctgcgctagaaatgcgcactctctccgcttttagactcttttgcccgtttctgacacctagcg

Function

NR:

description
PREDICTED: uncharacterized protein LOC106565277 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55686 True 284 lncRNA 0.49 1 9874112 9874395

Neighbor

gene id symbol gene type direction distance location
ncbp2 ncbp2 coding downstream 931991 8937305 ~ 8942121 (-)
LOC103026545 NA coding downstream 1050374 8811683 ~ 8823738 (-)
LOC103026828 NA coding downstream 1075160 8791997 ~ 8798952 (-)
LOC103027111 LOC108439438 coding downstream 1084221 8779031 ~ 8789891 (-)
LOC103027404 NA coding downstream 1100145 8767130 ~ 8773967 (-)
hyls1 NA coding upstream 105186 9979581 ~ 9993252 (-)
LOC103037233 ptp4a1,LOC107563655,LOC107597142 coding upstream 148654 10023049 ~ 10029625 (-)
LOC103036321 LOC108438678,LOC108270736,LOC107597144 coding upstream 160934 10035329 ~ 10069803 (-)
ly75 NA coding upstream 204459 10078854 ~ 10126523 (-)
LOC103036004 NA coding upstream 255569 10129964 ~ 10174716 (-)
G41398 NA non-coding downstream 3155 9870746 ~ 9870957 (-)
G41380 NA non-coding downstream 30199 9804994 ~ 9843913 (-)
G41383 NA non-coding downstream 49918 9821065 ~ 9824194 (-)
G41329 NA non-coding downstream 109739 9763910 ~ 9764373 (-)
G41243 NA non-coding downstream 519359 9354517 ~ 9354753 (-)
G41409 NA non-coding upstream 5753 9880148 ~ 9880389 (-)
G41424 NA non-coding upstream 35651 9910046 ~ 9910276 (-)
G41540 NA non-coding upstream 157350 10031745 ~ 10032665 (-)
G41553 psmd14,psde,LOC107563735,LOC107716971 non-coding upstream 407031 10281426 ~ 10289658 (-)
G41649 NA non-coding upstream 647931 10522326 ~ 10522569 (-)
LOC103022371 b3g5a,LOC108439423 other downstream 751684 9112078 ~ 9122428 (-)
G41071 col6a2 other downstream 1133830 8697913 ~ 8740282 (-)
G41052 col6a1,LOC102785632 other downstream 1249671 8575851 ~ 8624441 (-)
fam43a fam43a,LOC106573864 other downstream 1447017 8355999 ~ 8427095 (-)
G40959 NA other downstream 1639416 8234107 ~ 8234696 (-)
G41514 fth1,LOC103039853,LOC100692258,LOC104919244,LOC103365615,LOC105892494,LOC101464185,LOC100304657,LOC100528068 other upstream 71810 9946205 ~ 9953351 (-)
G41522 NA other upstream 88220 9962615 ~ 9963962 (-)
G41543 NA other upstream 289065 10163460 ~ 10225826 (-)
G41551 NA other upstream 395941 10270336 ~ 10270820 (-)
LOC103036175 tpm4,tpm4a,LOC103036175,LOC108424981,LOC107561904,LOC107665514,LOC107715082,LOC107757474,LOC107653617 other upstream 1110789 10985184 ~ 11016085 (-)

Expression


Co-expression Network