G46902


Basic Information

Item Value
gene id G46902
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9918579 ~ 9921173 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU53335
AGGGTACCAAGCTAAAAGACAGAGAGAAGAAAAACCTTGAGAGACAGGAGCGCTCGTGTCACCCGCGCTGTAGACCACTATCTTAGCCCCTCCCCTAGGTGGGCGGGGCACCGTTGCAGAGGGAGGGGCTGCAGTTTTAGAGCTTTTTCCTGAGACCACACACTCTTCTTCTAAAGGAAGTCACACAGATTCAATGAAACAATGCTAGCACAAAACACAGAGAAAGTGATCAAAGGACAAAGTCAGAGTTTAAAACTACCACCAGAACAGCAGAGATGTTGTTTTGTGTTGGACATCACCTATTTTCCAGCTCAAATCAGCTAATGCTGCAGCACATTATGCTTTGCTCCGTTTACTCCATGGCTTTTACATGTGTACCACTCACCTCTAGACTCTGAAGGTGCAGTGGTGGTGTGGGACGCTGTGGATGTGTCACCGTTGGATGTATCAGAGACCTTTTGCCCTGCACACATGGTCTTTAGGGTCTGAAAGACTGCCAGAGGAGCAACGTTCATCTTCAACAGGTCCACTATGATCTTGAAAACCTCTTGATCAATGACTATCCCAGCAGCCTGAGTGAGCTCGAACAGCTCAGTCTCCTCTGCATTTAAGACCTTTTTCTTCTTGATGCTGTATTTCTGCACATTCCCGCTGACGGTGACGCTCAGAGAGGGGGAATCCGGGGCTGTGGGCATCGTCCCGGGCTGCGCTGACTGTGACATACGCGCCACCTAAACACTATACAAACACATGAAACCACACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU53335 True 763 lncRNA 0.40 2 9918579 9921173

Neighbor

gene id symbol gene type direction distance location
CI01000006_09870216_09870854 NA coding downstream 47725 9869797 ~ 9870854 (-)
CI01000006_09857830_09868080 NA coding downstream 50342 9857816 ~ 9868237 (-)
CI01000006_09383325_09387907 AQP3B, AQP3 coding downstream 530672 9383270 ~ 9387907 (-)
CI01000006_09338560_09342684 VPS29 coding downstream 574796 9338265 ~ 9343783 (-)
CI01000006_09330816_09334587 ATPBB, GPN3 coding downstream 583814 9330616 ~ 9334765 (-)
CI01000006_10016544_10031947 FAM169AB coding upstream 95206 10016375 ~ 10031947 (-)
CI01000006_10044550_10045827 NA coding upstream 122877 10044050 ~ 10047230 (-)
CI01000006_10053771_10055045 NA coding upstream 132350 10053523 ~ 10055823 (-)
CI01000006_10078319_10079570 NA coding upstream 156590 10077763 ~ 10079570 (-)
CI01000006_10086956_10090090 NA coding upstream 165382 10086555 ~ 10090090 (-)
G46891 NA non-coding downstream 64347 9854032 ~ 9854232 (-)
G46764 NA non-coding downstream 183037 9730459 ~ 9735542 (-)
G46763 NA non-coding downstream 352737 9565615 ~ 9565842 (-)
G46465 NA non-coding downstream 489002 9429291 ~ 9429577 (-)
G46455 NA non-coding downstream 502288 9416020 ~ 9416291 (-)
G46972 NA non-coding upstream 67228 9988401 ~ 9988611 (-)
G46973 NA non-coding upstream 68031 9989204 ~ 9989436 (-)
G46979 NA non-coding upstream 74366 9995539 ~ 9995742 (-)
G46986 NA non-coding upstream 96410 10017583 ~ 10017849 (-)
CI01000006_07500281_07507754 NA other downstream 2407623 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 2941707 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 5356511 4559509 ~ 4562068 (-)
G43549 NA other downstream 5563151 4352510 ~ 4355428 (-)
G43102 NA other downstream 6984595 2908451 ~ 2933984 (-)
CI01000006_10453630_10483241 NA other upstream 561683 10453613 ~ 10484006 (-)
G47658 NA other upstream 1109738 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 1729190 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 2413236 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 2429586 12569205 ~ 12582487 (-)

Expression


Co-expression Network