ell (ell)


Basic Information

Item Value
gene id ell
gene name ell
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 20156539 ~ 20190975 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233262.3
tttttttccgtttttttgaCGACGACGGAGCGCGTGAGCGCGGTCGGAATGGTAGCTAGCAAGATGGCGGCGTTGAAGGAGGAGCAGTGTTACGGGCTGTCCTGCGGGAGAGTGAGCAACGGCAGCAATGTCTCCGTCTTTCACGTCAAACTCACTGACAGCGCGCTGAGAGCGTTTGAAGACTACCAGAGCAGCAAGGGTGTGTCCGCTCAGCCGCTAATACGGTTCACTGGTAATCAAGGGAAAATCTCAATACCACGGTCCGAAAATCAAAATGAGCTGCGAACGTTTACGTTCTATTTGTCCAATGTGGGGAGGGATAACCCCCATTTTGACTGTGTACAGCAGTATATTACAAGTGAAGGGAGCATACAGCTGGACTGCCTGGCAGGAATCCAGGACAAAATCACTGTGTGTGCCACAGATGACTCCTACCAGAAGGCCAGGCAAAGCATGGCTCAGGCTGAGGAGGAGACGCGCAGCCGGGCAGCTATTGTCATTAAGCCTGGCGGCAGATATGTGGGTAAAAGGGTTCAGATACGGAAACCAGCACCAGGTCTGTCGGATGTGGCCCCGTCGCGGCGGACTTCACGACCTGTGATCATCTCCAGCAGCATGAAGAAGAGCACAGCGCCACCACGGCCAATGAGAGAGCGCCTGGTGCACTTGTTAGCCCTCAAGCCCTACCGTAAACCTGAGCTGCTGGTCCGTCTCACCAAGGACGGCCTCTCGAGCCAGGACAAAGATATGCTGGACAGCCTCCTGCAACAGGTGGCTAACCTGAATAGTAAAGACAACACCTTCACATTGAAGGACTGTCTGTTTAAGGATGTACAGAAGGATTGGCCTGGTTACACTGAGGTAGACCAGCAGATTCTGAAGAGGATTCTTGTACGGAAACTGTGCAAGGCTAAGAGCAGCACTCCAACCCCTGGGGAGAGTCCAGTTAGCCCGCCCAAAGAGCAGGCCAGCAGCTCTCCATCACAGAAAAGGTGTGGTGCAGACTTCATTGACCCTCTGGCTAACAAGAAGCCCAGGATATCTCATCTGACCAGCAAGAGTGCACCCCCCAACGGAAAGCTAAGTTCTTCCAACGGCAAGGACTCATCCGCTTCGCAGCCAGCAGGAGAGAGCTCTTCCAGCATCCAGCTTCCTCTACTTGACATCCCTAGGCCTTTCGATCCTCTATCGGATGTCAGCAATGACTCCAGCCACAACGGAAGGGACTGTGATGGTCCGGAGGCTGCGGTGGCCGAGAGACTGAGCCACCCGCCCACGTTTACTGGCAGCTCCGGATCGAACGCCGCGTCCCCAGCCCCTGGCAGCCAGGATGGGCCTCAGGCTCACAGCACCTCGCCCTCCCTGCACGGCAAGTCTAAGAAGAAGTCCAAAAAACATAAGGACAAAGACAAGTCTAAAGAGAGAGACCGGGATAGAGAGCGAGCGCTGAAGAAGGAGAGGAAAGGGGCCGAGGGTGACAGTTCAGAGCCAAGGAAATCGTGTGAGGTCACTTTGAGTCCGGAcctgagcagcagcagtgttccACATAAAAGCACAGATCTGAATGGAATGTGCGACAGCTCCAGTATTTCTGCATCTTCGTCGGAGATGGCAGACTATTTATTaaaatacactgaaattGGCTCGCAAGAGCAGCGTCAGAGCTACAAGAATGACTTCAATTTGGAGTACAGCGAGTACAGGGGCCTTCATGCGCGAATAGAGGGAATCACTCGCCAGTTTACCGTGCTAGATGCTGAACTTAAGCAGCTCCAGCAAGGCACTGACAAATATAAGACAATCCACAATCAGATACTTCAAGAGTAtcgcaaaataaaaaagACTAACCCCAACTATAGCCAAGAGAGGAACCGCTGTGAATATCTCCACAACAAACTGGCACATATAAAGAAACTTATAGCAGAATATGATCAGCAGCAACTTCAAAACTGGCACTAACCATGTCGTGTTTATTTTTGTCCCCCTTTCTCATCTGGAAACAAGACAATGAGGGAGAAACTATGGATTTGCAggtttcttctttttgtttcttttttcttttttgggctTGCTCTAAAATAAAGTTTCTCTAATGCTAAAATGCCACGAAAAAGGAGTAATTCCCCTCGTGTTGAGGGCTGAACGCTCTAGTTAGAGCAATACAGACTGATtagatttgtttgtttctttcactttttttccctttttgtgGGGGAGGGTCTTTGGCATCTTTAGCCATACCTGCCAGTGTTGTCGCACTGCATTATGGGAAAGCCTTGCGTGGCATCAGTTCTCAGCTTCCCTCCCTCAAAGCACACAGATCTCTGAAGAGGAGAAATCACTTTGGGGATCACTTTACCAACCCTTTCCTTGCCTGCTAAACAGGGGCAAGCAACAGCTGAAACATATTTAGAAAAACAGAtcaaattttctttcttttgtttattgaaaagaaaaaaaaaagatttaagtaAATGAATATCATGTTTCCCTATGTAATGAATGGAAGGtacttatattttatgttttcatttttttaaattttttttttatttattatctttattttttttcgtcTTCCTTGGGGATATACCAGATTTATTACTGTACACTCCTCAGAatgaactgtttttttcctgttttcttcTCATCTCTTAAAAGAAAATCAGTATTTATGCAAACGCTGCCTTAGGTGTCAGGCGGTCCATAGTGCGTGCGCAGTCCATTAATTCATTAAAGATTTCTTTCTTAAGCAGA

Function

symbol description
ell Predicted to enable translation elongation factor activity. Acts upstream of or within vasculogenesis. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Orthologous to human ELL (elongation factor for RNA polymerase II).

NR:

description
PREDICTED: RNA polymerase II elongation factor ELL isoform X2

GO:

id name namespace
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0006414 translational elongation biological_process
GO:0001570 vasculogenesis biological_process
GO:0008023 transcription elongation factor complex cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K15183 ELL; RNA polymerase II elongation factor ELL

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233262.3 True 2757 mRNA 0.48 12 20156539 20190975

Neighbor

gene id symbol gene type direction distance location
dot1l dot1l,LOC107586394,LOC107719574,LOC107729667 coding downstream 9168 20113577 ~ 20147371 (-)
amh NA coding downstream 49401 20095583 ~ 20107138 (-)
LOC103047825 LOC103047825 coding downstream 88987 20065044 ~ 20067552 (-)
LOC103047302 lingo3,lingo3a,LOC108438765,LOC107719577,LOC107655199,LOC107596880,LOC107729688 coding downstream 96124 19983043 ~ 20060415 (-)
LOC103046490 LOC108438759 coding downstream 232026 19903699 ~ 19924513 (-)
fkbp8 fkbp8,LOC107719572,LOC107699404,LOC107586436 coding upstream 6822 20197797 ~ 20207160 (-)
LOC103024563 ssbp4,zgc:110158,LOC107719571,LOC107676978,LOC108267812,LOC108428898,LOC107729707 coding upstream 17514 20208489 ~ 20304319 (-)
tmem59l tmem59l,LOC108439280,LOC107719570,LOC107699406,LOC107676980,LOC107729706 coding upstream 177119 20368094 ~ 20384304 (-)
rex1bd cssa23h19orf60,clg08h19orf60,si:ch211-87h14.3,LOC103025814,LOC108439285,LOC104918420,LOC107729673 coding upstream 209827 20400802 ~ 20407670 (-)
LOC103021758 ankrd24,LOC108439268,LOC107719567,LOC106613472,LOC106584414 coding upstream 301184 20492159 ~ 20516371 (-)
LOC111192523 NA non-coding downstream 182930 19966560 ~ 19973609 (-)
G43983 NA non-coding downstream 315023 19839066 ~ 19841516 (-)
G43984 LOC108438760 non-coding downstream 320974 19833590 ~ 19835565 (-)
G43972 NA non-coding downstream 345653 19799130 ~ 19810886 (-)
LOC111192521 NA non-coding downstream 367899 19779462 ~ 19788640 (-)
G44134 NA non-coding upstream 176723 20367698 ~ 20367911 (-)
G44166 NA non-coding upstream 299334 20490309 ~ 20490872 (-)
G44183 NA non-coding upstream 381135 20572110 ~ 20572792 (-)
G44187 NA non-coding upstream 387932 20578907 ~ 20579919 (-)
G44193 NA non-coding upstream 443535 20634510 ~ 20634868 (-)
oaz1 oaz1,LOC107655198,LOC107719576 other downstream 66355 20086389 ~ 20090184 (-)
LOC103042724 NA other downstream 534386 19619423 ~ 19622153 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other downstream 2911830 17242364 ~ 17244709 (-)
G43173 LOC108437262 other downstream 3455187 16698949 ~ 16701352 (-)
LOC111192556 NA other downstream 4666818 15425387 ~ 15489721 (-)
LOC103026129 LOC103026129,LOC105011584,LOC104949087,LOC106584418,LOC108439287,LOC105927846,LOC100708594 other upstream 265406 20456381 ~ 20458320 (-)
LOC103027635 s1pr3a,LOC108439276,LOC107719654,LOC105927807,LOC101158267,LOC106584412 other upstream 390303 20581278 ~ 20587592 (-)
LOC103028592 LOC108410694 other upstream 1920448 22111423 ~ 22121856 (-)
atp11b si:dkey-211e20.10,atp11b,LOC107566880,LOC107747927,LOC106613933 other upstream 3568165 23759140 ~ 23844572 (-)
G44729 NA other upstream 3972589 24163564 ~ 24275260 (-)

Expression


Co-expression Network