LOC103024563 (ssbp4,zgc:110158,LOC107719571,LOC107676978,LOC108267812,LOC108428898,LOC107729707)


Basic Information

Item Value
gene id LOC103024563
gene name ssbp4,zgc:110158,LOC107719571,LOC107676978,LOC108267812,LOC108428898,LOC107729707
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 20208489 ~ 20304319 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601289.2
ATGTACGCCAAAGGTAAAGGAGCTGTCGTCCCTTCTGATAGTCAAGCGAGAGAAAAGTTAGCTTTATATGTGTACGAGTATTTGCTGCATGTTGGAGCACAGAAATCCGCACAGACCTTCCTGTCAGAGATCCGATGGGAGAAGAATATCACACTAGGAGAGCCTCCTGGGTTCCTGCACTCGTGGTGGTGtgtattttggGATCTGTACTGTGCGGCCCCAGACCGACGGGAGACATGTGAACATTCCAGCGAGGCCAAGGCTTTCCATGACTATAGTGCAGCAGCTGCCCCCAGTCCTGTAATGGGTAATATGCCTCCTAACGACGGCATGCCAGGCGGGCCCATGCCTCCCGGATTCTTTCAAGGTCCTCCTGGCTCACAGCCCTCACCTCACTCCCAGCCTCCCCCACACAACCCAAACAACCCCATGATGGGACCCCACGGTCAGCCCTTCATGTCTCCACGGTACCCAGGTGGACCCCGCCCATCACTCCGCATGCCAAATCAGCCTCCTGTGGGAGTTCCAGGGTCACAACCACTCCTGCCAAACAGTTTGGACCCCAGACCACAGGgACATCCAAACATGGGTGGCCCAATGAGGATGAACCCGCCCAGGGGGATGGGAGGCATGGGCCCACAGaACTATGGTGGAGGGATGAGGCCTCCTCCTAACTCTCTTGGCGGCCCAGCCATGTCAGGAATGAATATGGGTCCGGGTGGGCGAGGTCCCTGGCCAAATCCTAATGCAAACTCAATAGCCTACTCGTCCTCATCACCAGGAAACTATGTGGGGCCTCCAGGGGGTGGAGGGCCACCAGGAACGCCCATCATGCCAAGCCCAGGAGACTCAACAAATTCCAGTGAAAACATCTACACTATGATGAACCCTATTGGCCCCGGTGGCAACAGACCTAATTTCCCGATGGGGCCTGGCCCTGACGGTCCGATGGGTGGAATGGGGTCCATGGAACCACACCATATGAATGGGTCGCTAGGCTCGGGGGATATGGACGGGTTGCCAAAGaactCTCCAAACAACATGGCAGGTATGAATAACCCTCCAGGAACTCCGCGGGACGATGGAGAGATGGCAGGCAACTTCTTAAACCCATTCCAAAGTGAAAGTTATTCACCCAACATGACGATGAGTGTTTGATTTTCTTTCcccctgcttttttattttttacctttattttattttacccccccccccccctcccctcatTTTTACTCTTCCTTATTTGTCTCCTACCCAATTCTGCTGCATCTGGTGGGTTTTCCGCTCACTTTTTTCCTGTCCTCCCCTTTCCCCTTATCCTATCCAACATTTCAAACACTCTGGGTCGGTTGGGGGGGTGGGTCTCACCTCAGCCGGTTGCTGTGGTTATGGAGCTCAGGACCCTCAACTACCCACTCCAAAGCTGGCATGGTGGCATCGGCAGGCGAAAGCAGACCACGAGCCACAGGACGAATCTCCACTCTGCCCCCCACCTGCCAGCCTGCCTGGCTTTCTCACCGGCCCGGGGCACTGAGGGCGTgttagtgtatgagtgtgtgtatttgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtatgctTTTCTCTATGGGTGGGACTGTTCCAGAATAAAACTCAcagtgagctgctgctgctcagcgCCAAGGCTGGTGGTCTAAATTCAGTCatagtttgtttctttattctcctttattctttatttcgaTCGTCTCACGCGGTCGGCAGTCGAGGACAGAGGTGAGGCTGAGGTCAGTCGGCCCGTCTGACTGCTGTGTACATTCTGAAATGGAAAAAGCTAAACTGGTGATGATGCATCGGGGCAAAAACGGTCTCCTCatgatatatttgtatattattgattatattattGTTCTGATTTTCATAATTGATATTGTTATTGATGTAGTCATGATTTTACGGATATTTTCCTGTAAAGGGCACATTTGTATCTCAACGACATCGAAGACAGAATAAGCACACACTCAAGAATGCACAATGACACCTCTGTTTACATGATTTTAGGTAtttgtttgtctcttttttttttttggttttgttttcaTGTCGATTCGTTTTGTTGGATGTCTCCTTGCATATATATACCTCTTCCTGTGTTCTTCATGGAACTGATGTCATCACTACCAGAGTACCATTGTAAAAGTGTACTATCTCAGTATTGGAGTCTGTATGAAATCGAAGGCTGTCTGCTTGTCACACGAATTACAATCACTGTCAGCACTGGACCTGAAACATTTGTAGAATATTATATCGCATCCTCCCAAATGTTCTGTAAAATTTTTTCCTCACTGTCATTTTTTCCGTCATGCCTGatctgtgtgttcatgtgttgtCTTTATTGCGTTTCTACGTTTCTATCATGTAGCATGAAAAGCGTATTGCAGTCACTGTCAGAAGGCTTTTACTTCAGcgtagctttaaaaaaaattgctctaATCTTGCCTTTTCAAAGCATCCCAACTGTGTGATTGGTTCATTTAAAACCCCCTCACCTCTGTTCATTGTTGTAATATCCCTGACAGTTACATGTAAGCTTGTCATTAATGTTTCTTGTGATTTTGGAATCATGTATTGATTTTGAGATGATTTTAAATCCTACCCGAATGCCTGGAGGAGGAGCGGCCGGGCTTAATTATAATGGGGGGTAAAAACCCTCCTCAAGGCTCTAAGGCAGTTGCtcatttttttggttgttttattttttatttttagtcccATGCCTGTAAATACAACCTATTTCGCTTATTGGTCATTCAATCTCATTTGTATTTTCAATACACTACTTGTCTGTGAATCTTGTGTGGTTccatctttttccttttttcctcagaatcgAATCCCAGGAAGCCTCAGTTAGGACTTTTTTAAGCTTGCTCACTCATCATCGACTGTATGGAGATTAGCAACAACCTAGTCAAACGGCCATTCGTTCAAATTGAGTGTGCCCATATTATATCACTGTGCTTCAGATACTGTTCACTTTGCTCTTGTTGCTCTCTGGTTTAGTCATGTTTAATTGGATTGGACCTTCACTGAAATTGTTGTTTTCTTGCCCTGTGACCCTGTGGTATCAACAGCGTGTTTCTCTCCAATTGACAGCACCAGGCTCACcctgtaatcagattacaaagaGCAAATAGTCACTCCAAGTGCTCTCCAATCTGTCTGGTACACAGCCCCCATACCCCTCATCCCTCACCCTAATCCCCACATCCCATCCCCTGTCCCCAGCCTTTGTTAATCCCTGCACcttttgattttattgtaaatactgtaaaatgcaTTTTGATATCATTGACATGTTTTGATATGTCAGTCATAACCAAcgagaacagctgaaaataagttataaagaatttgttttgtgtttttgtattttaaagagATGGTTTGGTGTAAAGTATCAGATTGAGGGGATCGCCCCTATTGCATAAGATAAGGAATAcaagaaaatatttttctgaattAATACCTCAAAAAGAATCAAATTTAAATCCACTGTAAACATTTGTATCTCTGGTGGGATTCACAAATACAGCAGTGTGTTTGTGaaggaaaaacatttttgagtctgaagacagagctgtatatagttttcaagaggacagagagagagagagagctaacaGATTAACACATAATGGCACTTGCGGCAAGTGACTTTGATATATGCAGGCCTGTATTCACATAGATTGACCCCAATCGATTAGATTGCAATGTAGCCTTCCAAAGAACATCCTAATTGTGTTGTTTATGGTCCCTGTTAACTGCAATATTAAATATCAATCATCAAATTGATGCACCCTACCCATTTCACAAATGCAGGCCAATCTAACATCAAACCAAGGGACCAAAAGGGCACATAATTAACTTGAAGGtctcttaaaaacaaatatacacgTTGTCGAACACGAATTCGGATTTGCACAGCATAACATTTAGTGTTAAAACAACACTAAGTAGACTGATTCTCCCTAATCCTCTCTCAGTCCTTAATTGTACAATTGTTGGCCATCTCTGTACTTCTATTGTGATGTATAATACTGTAACATTTGGAGGGATTTGGaaaaggcagtgtgtgtgtgggaggggtaTATTTGGCGAGGGTGGGAAGAGAAGAGATTTTCCTGTACCTTTCATTGTCCTTTCTGGCGACACGACAGTATTCAATATGAAGCAGTCTGTCTCATTGGGTTTGCTTTGTATTTCATGGTAGGCTAGTTTGGATCTGTGTCTTAGGGACTTAGGTGTCTTGTGTAGGTAATAAAGATGTCCTTTGTATGTTACTTTATATTGTAAAGTTTCTTTAgactgacagaaaaaaaagaaaatttgctTATCAAAAACAAATGGCTGcatcaataataaatgtaatttgatATTT

Function

symbol description
ssbp4 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SSBP4 (single stranded DNA binding protein 4).
zgc:110158 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SSBP3 (single stranded DNA binding protein 3) and SSBP4 (single stranded DNA binding protein 4).

NR:

description
single-stranded DNA-binding protein 3

GO:

id name namespace
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601289.2 True 4435 mRNA 0.44 18 20208489 20304319

Neighbor

gene id symbol gene type direction distance location
fkbp8 fkbp8,LOC107719572,LOC107699404,LOC107586436 coding downstream 1329 20197797 ~ 20207160 (-)
ell ell coding downstream 17514 20156539 ~ 20190975 (-)
dot1l dot1l,LOC107586394,LOC107719574,LOC107729667 coding downstream 61118 20113577 ~ 20147371 (-)
amh NA coding downstream 101351 20095583 ~ 20107138 (-)
LOC103047825 LOC103047825 coding downstream 140937 20065044 ~ 20067552 (-)
tmem59l tmem59l,LOC108439280,LOC107719570,LOC107699406,LOC107676980,LOC107729706 coding upstream 63775 20368094 ~ 20384304 (-)
rex1bd cssa23h19orf60,clg08h19orf60,si:ch211-87h14.3,LOC103025814,LOC108439285,LOC104918420,LOC107729673 coding upstream 96483 20400802 ~ 20407670 (-)
LOC103021758 ankrd24,LOC108439268,LOC107719567,LOC106613472,LOC106584414 coding upstream 187840 20492159 ~ 20516371 (-)
trnaq-uug_1 NA coding upstream 442191 20746510 ~ 20746581 (-)
LOC103030060 LOC108430094,LOC108271164,LOC107676970 coding upstream 514599 20818918 ~ 20916287 (-)
G44129 NA non-coding downstream 34431 20173720 ~ 20174058 (-)
LOC111192523 NA non-coding downstream 234880 19966560 ~ 19973609 (-)
G43983 NA non-coding downstream 366973 19839066 ~ 19841516 (-)
G43984 LOC108438760 non-coding downstream 372924 19833590 ~ 19835565 (-)
G43972 NA non-coding downstream 397603 19799130 ~ 19810886 (-)
G44134 NA non-coding upstream 63379 20367698 ~ 20367911 (-)
G44166 NA non-coding upstream 185990 20490309 ~ 20490872 (-)
G44183 NA non-coding upstream 267791 20572110 ~ 20572792 (-)
G44187 NA non-coding upstream 274588 20578907 ~ 20579919 (-)
G44193 NA non-coding upstream 330191 20634510 ~ 20634868 (-)
oaz1 oaz1,LOC107655198,LOC107719576 other downstream 118305 20086389 ~ 20090184 (-)
LOC103042724 NA other downstream 586336 19619423 ~ 19622153 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other downstream 2963780 17242364 ~ 17244709 (-)
G43173 LOC108437262 other downstream 3507137 16698949 ~ 16701352 (-)
LOC111192556 NA other downstream 4718768 15425387 ~ 15489721 (-)
LOC103026129 LOC103026129,LOC105011584,LOC104949087,LOC106584418,LOC108439287,LOC105927846,LOC100708594 other upstream 152062 20456381 ~ 20458320 (-)
LOC103027635 s1pr3a,LOC108439276,LOC107719654,LOC105927807,LOC101158267,LOC106584412 other upstream 276959 20581278 ~ 20587592 (-)
LOC103028592 LOC108410694 other upstream 1807104 22111423 ~ 22121856 (-)
atp11b si:dkey-211e20.10,atp11b,LOC107566880,LOC107747927,LOC106613933 other upstream 3454821 23759140 ~ 23844572 (-)
G44729 NA other upstream 3859245 24163564 ~ 24275260 (-)

Expression


Co-expression Network