RNA id: XM_015601289.2


Basic Information

Item Value
RNA id XM_015601289.2
length 4435
RNA type mRNA
GC content 0.44
exon number 18
gene id LOC103024563
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 20208489 ~ 20304319 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTACGCCAAAGGTAAAGGAGCTGTCGTCCCTTCTGATAGTCAAGCGAGAGAAAAGTTAGCTTTATATGTGTACGAGTATTTGCTGCATGTTGGAGCACAGAAATCCGCACAGACCTTCCTGTCAGAGATCCGATGGGAGAAGAATATCACACTAGGAGAGCCTCCTGGGTTCCTGCACTCGTGGTGGTGtgtattttggGATCTGTACTGTGCGGCCCCAGACCGACGGGAGACATGTGAACATTCCAGCGAGGCCAAGGCTTTCCATGACTATAGTGCAGCAGCTGCCCCCAGTCCTGTAATGGGTAATATGCCTCCTAACGACGGCATGCCAGGCGGGCCCATGCCTCCCGGATTCTTTCAAGGTCCTCCTGGCTCACAGCCCTCACCTCACTCCCAGCCTCCCCCACACAACCCAAACAACCCCATGATGGGACCCCACGGTCAGCCCTTCATGTCTCCACGGTACCCAGGTGGACCCCGCCCATCACTCCGCATGCCAAATCAGCCTCCTGTGGGAGTTCCAGGGTCACAACCACTCCTGCCAAACAGTTTGGACCCCAGACCACAGGgACATCCAAACATGGGTGGCCCAATGAGGATGAACCCGCCCAGGGGGATGGGAGGCATGGGCCCACAGaACTATGGTGGAGGGATGAGGCCTCCTCCTAACTCTCTTGGCGGCCCAGCCATGTCAGGAATGAATATGGGTCCGGGTGGGCGAGGTCCCTGGCCAAATCCTAATGCAAACTCAATAGCCTACTCGTCCTCATCACCAGGAAACTATGTGGGGCCTCCAGGGGGTGGAGGGCCACCAGGAACGCCCATCATGCCAAGCCCAGGAGACTCAACAAATTCCAGTGAAAACATCTACACTATGATGAACCCTATTGGCCCCGGTGGCAACAGACCTAATTTCCCGATGGGGCCTGGCCCTGACGGTCCGATGGGTGGAATGGGGTCCATGGAACCACACCATATGAATGGGTCGCTAGGCTCGGGGGATATGGACGGGTTGCCAAAGaactCTCCAAACAACATGGCAGGTATGAATAACCCTCCAGGAACTCCGCGGGACGATGGAGAGATGGCAGGCAACTTCTTAAACCCATTCCAAAGTGAAAGTTATTCACCCAACATGACGATGAGTGTTTGATTTTCTTTCcccctgcttttttattttttacctttattttattttacccccccccccccctcccctcatTTTTACTCTTCCTTATTTGTCTCCTACCCAATTCTGCTGCATCTGGTGGGTTTTCCGCTCACTTTTTTCCTGTCCTCCCCTTTCCCCTTATCCTATCCAACATTTCAAACACTCTGGGTCGGTTGGGGGGGTGGGTCTCACCTCAGCCGGTTGCTGTGGTTATGGAGCTCAGGACCCTCAACTACCCACTCCAAAGCTGGCATGGTGGCATCGGCAGGCGAAAGCAGACCACGAGCCACAGGACGAATCTCCACTCTGCCCCCCACCTGCCAGCCTGCCTGGCTTTCTCACCGGCCCGGGGCACTGAGGGCGTgttagtgtatgagtgtgtgtatttgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtatgctTTTCTCTATGGGTGGGACTGTTCCAGAATAAAACTCAcagtgagctgctgctgctcagcgCCAAGGCTGGTGGTCTAAATTCAGTCatagtttgtttctttattctcctttattctttatttcgaTCGTCTCACGCGGTCGGCAGTCGAGGACAGAGGTGAGGCTGAGGTCAGTCGGCCCGTCTGACTGCTGTGTACATTCTGAAATGGAAAAAGCTAAACTGGTGATGATGCATCGGGGCAAAAACGGTCTCCTCatgatatatttgtatattattgattatattattGTTCTGATTTTCATAATTGATATTGTTATTGATGTAGTCATGATTTTACGGATATTTTCCTGTAAAGGGCACATTTGTATCTCAACGACATCGAAGACAGAATAAGCACACACTCAAGAATGCACAATGACACCTCTGTTTACATGATTTTAGGTAtttgtttgtctcttttttttttttggttttgttttcaTGTCGATTCGTTTTGTTGGATGTCTCCTTGCATATATATACCTCTTCCTGTGTTCTTCATGGAACTGATGTCATCACTACCAGAGTACCATTGTAAAAGTGTACTATCTCAGTATTGGAGTCTGTATGAAATCGAAGGCTGTCTGCTTGTCACACGAATTACAATCACTGTCAGCACTGGACCTGAAACATTTGTAGAATATTATATCGCATCCTCCCAAATGTTCTGTAAAATTTTTTCCTCACTGTCATTTTTTCCGTCATGCCTGatctgtgtgttcatgtgttgtCTTTATTGCGTTTCTACGTTTCTATCATGTAGCATGAAAAGCGTATTGCAGTCACTGTCAGAAGGCTTTTACTTCAGcgtagctttaaaaaaaattgctctaATCTTGCCTTTTCAAAGCATCCCAACTGTGTGATTGGTTCATTTAAAACCCCCTCACCTCTGTTCATTGTTGTAATATCCCTGACAGTTACATGTAAGCTTGTCATTAATGTTTCTTGTGATTTTGGAATCATGTATTGATTTTGAGATGATTTTAAATCCTACCCGAATGCCTGGAGGAGGAGCGGCCGGGCTTAATTATAATGGGGGGTAAAAACCCTCCTCAAGGCTCTAAGGCAGTTGCtcatttttttggttgttttattttttatttttagtcccATGCCTGTAAATACAACCTATTTCGCTTATTGGTCATTCAATCTCATTTGTATTTTCAATACACTACTTGTCTGTGAATCTTGTGTGGTTccatctttttccttttttcctcagaatcgAATCCCAGGAAGCCTCAGTTAGGACTTTTTTAAGCTTGCTCACTCATCATCGACTGTATGGAGATTAGCAACAACCTAGTCAAACGGCCATTCGTTCAAATTGAGTGTGCCCATATTATATCACTGTGCTTCAGATACTGTTCACTTTGCTCTTGTTGCTCTCTGGTTTAGTCATGTTTAATTGGATTGGACCTTCACTGAAATTGTTGTTTTCTTGCCCTGTGACCCTGTGGTATCAACAGCGTGTTTCTCTCCAATTGACAGCACCAGGCTCACcctgtaatcagattacaaagaGCAAATAGTCACTCCAAGTGCTCTCCAATCTGTCTGGTACACAGCCCCCATACCCCTCATCCCTCACCCTAATCCCCACATCCCATCCCCTGTCCCCAGCCTTTGTTAATCCCTGCACcttttgattttattgtaaatactgtaaaatgcaTTTTGATATCATTGACATGTTTTGATATGTCAGTCATAACCAAcgagaacagctgaaaataagttataaagaatttgttttgtgtttttgtattttaaagagATGGTTTGGTGTAAAGTATCAGATTGAGGGGATCGCCCCTATTGCATAAGATAAGGAATAcaagaaaatatttttctgaattAATACCTCAAAAAGAATCAAATTTAAATCCACTGTAAACATTTGTATCTCTGGTGGGATTCACAAATACAGCAGTGTGTTTGTGaaggaaaaacatttttgagtctgaagacagagctgtatatagttttcaagaggacagagagagagagagagctaacaGATTAACACATAATGGCACTTGCGGCAAGTGACTTTGATATATGCAGGCCTGTATTCACATAGATTGACCCCAATCGATTAGATTGCAATGTAGCCTTCCAAAGAACATCCTAATTGTGTTGTTTATGGTCCCTGTTAACTGCAATATTAAATATCAATCATCAAATTGATGCACCCTACCCATTTCACAAATGCAGGCCAATCTAACATCAAACCAAGGGACCAAAAGGGCACATAATTAACTTGAAGGtctcttaaaaacaaatatacacgTTGTCGAACACGAATTCGGATTTGCACAGCATAACATTTAGTGTTAAAACAACACTAAGTAGACTGATTCTCCCTAATCCTCTCTCAGTCCTTAATTGTACAATTGTTGGCCATCTCTGTACTTCTATTGTGATGTATAATACTGTAACATTTGGAGGGATTTGGaaaaggcagtgtgtgtgtgggaggggtaTATTTGGCGAGGGTGGGAAGAGAAGAGATTTTCCTGTACCTTTCATTGTCCTTTCTGGCGACACGACAGTATTCAATATGAAGCAGTCTGTCTCATTGGGTTTGCTTTGTATTTCATGGTAGGCTAGTTTGGATCTGTGTCTTAGGGACTTAGGTGTCTTGTGTAGGTAATAAAGATGTCCTTTGTATGTTACTTTATATTGTAAAGTTTCTTTAgactgacagaaaaaaaagaaaatttgctTATCAAAAACAAATGGCTGcatcaataataaatgtaatttgatATTT

Function

GO:

id name namespace
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59568 lncRNA downstream 34431 20173720 ~ 20174058 (-) True G44129
TU59456 lncRNA downstream 118305 20086389 ~ 20090184 (-) True oaz1
XR_002649960.1 lncRNA downstream 234880 19966560 ~ 19973609 (-) True LOC111192523
TU59364 lncRNA downstream 366973 19839066 ~ 19841516 (-) True G43983
TU59365 lncRNA downstream 372924 19833590 ~ 19835565 (-) True G43984
TU59574 lncRNA upstream 63379 20367698 ~ 20367911 (-) True G44134
TU59595 lncRNA upstream 152062 20456381 ~ 20458189 (-) False LOC103026129
TU59618 lncRNA upstream 185990 20490309 ~ 20490872 (-) True G44166
TU59640 lncRNA upstream 267791 20572110 ~ 20572792 (-) True G44183
TU59644 lncRNA upstream 274588 20578907 ~ 20579919 (-) True G44187
XM_022669782.1 mRNA downstream 1329 20197797 ~ 20207160 (-) True fkbp8
XM_007233262.3 mRNA downstream 17514 20156539 ~ 20190975 (-) True ell
XM_022669778.1 mRNA downstream 61123 20113577 ~ 20147366 (-) False dot1l
XM_007233264.3 mRNA upstream 63775 20368094 ~ 20384304 (-) True tmem59l
XM_007233267.3 mRNA upstream 96483 20400802 ~ 20407670 (-) True rex1bd
XM_007233268.3 mRNA upstream 152064 20456383 ~ 20458320 (-) True LOC103026129
XM_022669786.1 mRNA upstream 187840 20492159 ~ 20516371 (-) True LOC103021758
XM_007233274.3 mRNA upstream 276959 20581278 ~ 20587592 (-) True LOC103027635
XR_002649956.1 other downstream 586336 19619424 ~ 19622153 (-) False LOC103042724
XR_002649954.1 other downstream 1444870 18763320 ~ 18763619 (-) True LOC111192517
TU58215 other downstream 3507137 16698949 ~ 16701352 (-) True G43173
TU58216 other downstream 3507137 16699571 ~ 16701352 (-) False G43173
LOC111192556 other downstream 4718768 15487709 ~ 15489721 (-) False LOC111192556
TU59647 other upstream 280118 20584437 ~ 20587572 (-) False LOC103027635
trnaq-uug_1 other upstream 442191 20746510 ~ 20746581 (-) True trnaq-uug_1
TU60436 other upstream 3859245 24163564 ~ 24273686 (-) False G44729
TU60424 other upstream 3963819 24268138 ~ 24275260 (-) True G44729
TU60432 other upstream 3963819 24268138 ~ 24275260 (-) False G44729

Expression Profile