RNA id: TU59595


Basic Information

Item Value
RNA id TU59595
length 940
lncRNA type sense_over
GC content 0.40
exon number 3
gene id LOC103026129
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 20456381 ~ 20458320 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGACCGTTGCAGTTCAAAATCTAGAGCTGCGGGAGGAGCGCTGAGTGTCAGAGAAAGCGGCGCCGAGTACAGTAATTTACCATAACATACAGAAGAGATTAACACAGAACTGCTGGATTAACCTGTTAACTTCTCATTGCGAGCTTTTGATAGTTCAGGAATTCGTAAAAATGTCGAAGAAACAAATTTACTACTCTGACAAGTACACAGACGACGAGTTTGAGTACAGACACGTCATGCTGCCGAAACAGCTGTCCAAGCTGGTGCCTACTTCCCATCTAATGTCAGAGGAGGAATGGAGAGGACTTGGAGTTCAGCAGAGCCAAGGATGGGTCCATTACATGATACATAAGCCAGAGCCCCACATACTACTTTTCCGAAGACCACTTCCCAAAGAATGAGAATCAGAGAACTGGACCGGTGACCAAGCTGAAGTGGTGTGGTCTGCTTAGACCCTGTGTGCATTTCTTTCCATGTGTTTTGGGTTGTATATAAAGCTCATTATTTTCAGATCTATGGCATTGAAATGTTACAAAATGTTACCCTCACTCCACTTTGATTTGGAGGTGTAGTAGTGAAACTCCAAATGGAGCTTTTTGGGGAAAGATCAGCCCCATGTGTAAAGAAGTGTCTGTCTAGATCTACACTGTGTAACAAAACGCTGGGTGGGATTTCATGTTATTTCAGCATTGACATGGATGTGATAGTTTGAAAGATGTTGgtaatattctgttttattttacattggtGAACAAATGTGACCTAGTGTAATTCAGTAAATATTTGGACTGCAAAGATGTAAGGTCTAAAATTTTACTTGGTTGGCTTTTGGCTGCACTGAATATATCTATAAACATCTCTACCTTGTACAAATGTAGACCAGTTAACTtgttcattaatttattgtttgGAACAAGTCAATAAATACTCTTTGTTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59574 lncRNA downstream 88470 20367698 ~ 20367911 (-) True G44134
TU59568 lncRNA downstream 282323 20173720 ~ 20174058 (-) True G44129
TU59456 lncRNA downstream 366197 20086389 ~ 20090184 (-) True oaz1
XR_002649960.1 lncRNA downstream 482772 19966560 ~ 19973609 (-) True LOC111192523
TU59364 lncRNA downstream 614865 19839066 ~ 19841516 (-) True G43983
TU59618 lncRNA upstream 32120 20490309 ~ 20490872 (-) True G44166
TU59640 lncRNA upstream 113921 20572110 ~ 20572792 (-) True G44183
TU59644 lncRNA upstream 120718 20578907 ~ 20579919 (-) True G44187
TU59651 lncRNA upstream 176321 20634510 ~ 20634868 (-) True G44193
TU59659 lncRNA upstream 193495 20651684 ~ 20659154 (-) True G44201
XM_007233267.3 mRNA downstream 48711 20400802 ~ 20407670 (-) True rex1bd
XM_007233264.3 mRNA downstream 72077 20368094 ~ 20384304 (-) True tmem59l
XM_015601289.2 mRNA downstream 152062 20208489 ~ 20304319 (-) True LOC103024563
XM_022669782.1 mRNA downstream 249221 20197797 ~ 20207160 (-) True fkbp8
XM_007233262.3 mRNA downstream 265406 20156539 ~ 20190975 (-) True ell
XM_022669786.1 mRNA upstream 33970 20492159 ~ 20516371 (-) True LOC103021758
XM_007233274.3 mRNA upstream 123089 20581278 ~ 20587592 (-) True LOC103027635
XM_015601293.2 mRNA upstream 360729 20818918 ~ 20916287 (-) True LOC103030060
XM_022669800.1 mRNA upstream 1472175 21930364 ~ 21990631 (-) True LOC103044657
XM_015601299.2 mRNA upstream 1472175 21930364 ~ 21949704 (-) False LOC103044657
XR_002649956.1 other downstream 834228 19619424 ~ 19622153 (-) False LOC103042724
XR_002649954.1 other downstream 1692762 18763320 ~ 18763619 (-) True LOC111192517
TU58215 other downstream 3755029 16698949 ~ 16701352 (-) True G43173
TU58216 other downstream 3755029 16699571 ~ 16701352 (-) False G43173
LOC111192556 other downstream 4966660 15487709 ~ 15489721 (-) False LOC111192556
TU59647 other upstream 126248 20584437 ~ 20587572 (-) False LOC103027635
trnaq-uug_1 other upstream 288321 20746510 ~ 20746581 (-) True trnaq-uug_1
TU60436 other upstream 3705375 24163564 ~ 24273686 (-) False G44729
TU60424 other upstream 3809949 24268138 ~ 24275260 (-) True G44729
TU60432 other upstream 3809949 24268138 ~ 24275260 (-) False G44729

Expression Profile