RNA id: XM_007233267.3


Basic Information

Item Value
RNA id XM_007233267.3
length 991
RNA type mRNA
GC content 0.44
exon number 5
gene id rex1bd
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 20400802 ~ 20407670 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGTCACGTGAACGTGACGTTATGTGACGTTGTATGTTGTAAACAGGAAGTAGGTGGTGAGCGGCTGCGTTGCGTTGCGTTGGCGACAGCATGtcCCCTACAGATTTCAAAAGTTTGGTGCGGAGATTTTACGCACTCCAGGCTGAGCGTGTGGAGGCGTACAAGCTCTTTGACGAGGGTCACGAGGCATACTTGAGGACAGGGCCTCACTACGACTTTGACCATTACAGACAGCTGGTTCATGAGATAACCAAGGCGTTCTGTGGCATCTCTAAAGAAGTTTTGGAGATTAAACAGCGCCTCCACCAAGACTTTGACCGTCCAGATCTCTCTGAACACATTGAGAAGCTGCAGATTAAGGAGAAGCAGAAACTGGAACTGACAGCTAAATTGCAGCTGGCCAAGCAGAGTGCTCAAGATCACCCAGATGACGAGGGCTGTCAGGAGAAGCTCCAGGAGATCAAACATGAAATCATTAAGAACAAGGAGGCTCTGAGTGAGATTCTGCAGGACTTTAAGTACGACTCTGAAGAACCTGAATGAAGGGTGGAGAACCTGAATGAAGGGTGGAGGGTGCTGTCTGGAACGATATGAATGGAGTTCTCTTCCATGGCTTTGCCTTTTCGTGAGGAGCAGCTGAAGCTTTTCATTGCTGCCTGTGTGCAGTGAGCAACTACACTGTTGATGTGATGTGgagattttgaaaaaaaaaactttttttttttttttttaaccataatgtttttttgcagACATGGcaaaatacctttttttctaaaatgctTTATTGTGCCAGCTTTATTCACTTGAGATGAGCATCTAAAAGTAAGCCATCAAGCTTAATCTACTTCACTACTCAAAGACTCAGCTACCCCACGGGACACAACACACCGTTAACCTCTGCCAGCTGATCTTTTGGCATAATAAAAGAAGTTGTCttgtatgttaaatatattgtgatttaatacaaaaataaaagtgagaACGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59574 lncRNA downstream 32891 20367698 ~ 20367911 (-) True G44134
TU59568 lncRNA downstream 226744 20173720 ~ 20174058 (-) True G44129
TU59456 lncRNA downstream 310618 20086389 ~ 20090184 (-) True oaz1
XR_002649960.1 lncRNA downstream 427193 19966560 ~ 19973609 (-) True LOC111192523
TU59364 lncRNA downstream 559286 19839066 ~ 19841516 (-) True G43983
TU59595 lncRNA upstream 48711 20456381 ~ 20458189 (-) False LOC103026129
TU59618 lncRNA upstream 82639 20490309 ~ 20490872 (-) True G44166
TU59640 lncRNA upstream 164440 20572110 ~ 20572792 (-) True G44183
TU59644 lncRNA upstream 171237 20578907 ~ 20579919 (-) True G44187
TU59651 lncRNA upstream 226840 20634510 ~ 20634868 (-) True G44193
XM_007233264.3 mRNA downstream 16498 20368094 ~ 20384304 (-) True tmem59l
XM_015601289.2 mRNA downstream 96483 20208489 ~ 20304319 (-) True LOC103024563
XM_022669782.1 mRNA downstream 193642 20197797 ~ 20207160 (-) True fkbp8
XM_007233262.3 mRNA downstream 209827 20156539 ~ 20190975 (-) True ell
XM_022669780.1 mRNA downstream 253443 20113577 ~ 20147359 (-) False dot1l
XM_007233268.3 mRNA upstream 48713 20456383 ~ 20458320 (-) True LOC103026129
XM_022669786.1 mRNA upstream 84489 20492159 ~ 20516371 (-) True LOC103021758
XM_007233274.3 mRNA upstream 173608 20581278 ~ 20587592 (-) True LOC103027635
XM_015601293.2 mRNA upstream 411248 20818918 ~ 20916287 (-) True LOC103030060
XM_022669800.1 mRNA upstream 1522694 21930364 ~ 21990631 (-) True LOC103044657
XR_002649956.1 other downstream 778649 19619424 ~ 19622153 (-) False LOC103042724
XR_002649954.1 other downstream 1637183 18763320 ~ 18763619 (-) True LOC111192517
TU58215 other downstream 3699450 16698949 ~ 16701352 (-) True G43173
TU58216 other downstream 3699450 16699571 ~ 16701352 (-) False G43173
LOC111192556 other downstream 4911081 15487709 ~ 15489721 (-) False LOC111192556
TU59647 other upstream 176767 20584437 ~ 20587572 (-) False LOC103027635
trnaq-uug_1 other upstream 338840 20746510 ~ 20746581 (-) True trnaq-uug_1
TU60436 other upstream 3755894 24163564 ~ 24273686 (-) False G44729
TU60424 other upstream 3860468 24268138 ~ 24275260 (-) True G44729
TU60432 other upstream 3860468 24268138 ~ 24275260 (-) False G44729

Expression Profile