RNA id: TU59640


Basic Information

Item Value
RNA id TU59640
length 683
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G44183
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 20572110 ~ 20572792 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caatataattacaataatgaATTTAATGTACATTATTCAAAAGTCATCACGCAATGGCATTGCCAGGctatgaaaaattaaagtgttctGCCCTTTTTGCTCAGTGTCACGCGGGCCAGACGAGACGCAGACATGTGCAGgtacttaatgtaaagtttattAGCAAAATGGTAAAAGAGTAACATGGGACAGGCATGGTGAATAGAGCAGCAATAAACAAGCGAAagggaaacagaaaacaggcTAGAGTTCATACACAGGAGGTTCAAAACAGAGCAAGGGGGCAAGGCAAAGGAATAGTCAAAAAACAAAGCAGGGTCTAAACCAAGAGAAGCTAATAAACAAAGGGCTAGGCTAAAGAGAGGTCAAAACGAAAAAAACAGATCAGCAACAAACAATACAAAGTACAAACGAAACGCTGGGTAGAAGAGCTATGAGAATAGGttcaatactcagcaacagggaacagaaacagaggggtatttataaTAAAGGCATCAGGAAATGGCAATGGAAACAGTCATGTGATCCGAAGTGTAGAGCGCAGGTGCAGActgggaaatgtagtctttAGAGCGAGAGCTGGAGTCCTATAacgtataaatatatatatttttgtgatcAATTCTTTATTGAAAGCATACAGGtaaaccacaaaaaaataaaaataaaacccatACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59618 lncRNA downstream 81238 20490309 ~ 20490872 (-) True G44166
TU59595 lncRNA downstream 113921 20456381 ~ 20458189 (-) False LOC103026129
TU59574 lncRNA downstream 204199 20367698 ~ 20367911 (-) True G44134
TU59568 lncRNA downstream 398052 20173720 ~ 20174058 (-) True G44129
TU59456 lncRNA downstream 481926 20086389 ~ 20090184 (-) True oaz1
TU59644 lncRNA upstream 6115 20578907 ~ 20579919 (-) True G44187
TU59651 lncRNA upstream 61718 20634510 ~ 20634868 (-) True G44193
TU59659 lncRNA upstream 78892 20651684 ~ 20659154 (-) True G44201
TU59660 lncRNA upstream 86379 20659171 ~ 20663068 (-) True G44202
TU59665 lncRNA upstream 97167 20669959 ~ 20671803 (-) True G44205
XM_022669786.1 mRNA downstream 55739 20492159 ~ 20516371 (-) True LOC103021758
XM_007233268.3 mRNA downstream 113790 20456383 ~ 20458320 (-) True LOC103026129
XM_007233267.3 mRNA downstream 164440 20400802 ~ 20407670 (-) True rex1bd
XM_007233264.3 mRNA downstream 187806 20368094 ~ 20384304 (-) True tmem59l
XM_015601289.2 mRNA downstream 267791 20208489 ~ 20304319 (-) True LOC103024563
XM_007233274.3 mRNA upstream 8486 20581278 ~ 20587592 (-) True LOC103027635
XM_015601293.2 mRNA upstream 246126 20818918 ~ 20916287 (-) True LOC103030060
XM_022669800.1 mRNA upstream 1357572 21930364 ~ 21990631 (-) True LOC103044657
XM_015601299.2 mRNA upstream 1357572 21930364 ~ 21949704 (-) False LOC103044657
XM_007243349.3 mRNA upstream 1428702 22001494 ~ 22008022 (-) True hsd11b1l
XR_002649956.1 other downstream 949957 19619424 ~ 19622153 (-) False LOC103042724
XR_002649954.1 other downstream 1808491 18763320 ~ 18763619 (-) True LOC111192517
TU58215 other downstream 3870758 16698949 ~ 16701352 (-) True G43173
TU58216 other downstream 3870758 16699571 ~ 16701352 (-) False G43173
LOC111192556 other downstream 5082389 15487709 ~ 15489721 (-) False LOC111192556
TU59647 other upstream 11645 20584437 ~ 20587572 (-) False LOC103027635
trnaq-uug_1 other upstream 173718 20746510 ~ 20746581 (-) True trnaq-uug_1
TU60436 other upstream 3590772 24163564 ~ 24273686 (-) False G44729
TU60424 other upstream 3695346 24268138 ~ 24275260 (-) True G44729
TU60432 other upstream 3695346 24268138 ~ 24275260 (-) False G44729

Expression Profile