G47109


Basic Information

Item Value
gene id G47109
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10507950 ~ 10508752 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU53568
GAAAGGAAATGCATCATTGCAGTATTCATCTGTCCATTTCCCAGAGTCACTGAATGAGACTACAGTACAGGATCCTGCAGCATCTGGTTGCCATGTGCTCCAGTAACTTCTGGTTTTCAGCCTCATTCCTGATACTGACGAGGTCTGTGTGATGTTCTCTGCAGTAACTCTGAGCTTCAGTCCAGGTTTTGTACTGGTAAATTAAAACATAAGTAGCACTGGCATTTTGTCTTCCATCATAGCAGACGCTAGGATAAAATGTATTGGAGCAGTCTGCTGTATACCATCTCCCACTGTTCATATACACACACAGACTTTGTTCTCCAGAATTGTCTGGTCCTCGGTTATACCAGTTCCTGAACTCCTTCCCTCCCACGTTGAAGAAATCACTGTCCTCTAGAGTCCATTTCCAACTGCTTAGATCATCATAGAGTCCAATCCAGGCCAGATCAATGGAATCATCTTTAACTGTGTCCAATAACTGAACCGTCTGTTGGTTATTCTCAGTGGTGGCCAGATCAGTGTATTTATCTCTACAGTATCTCTGAGCTTCTGCCCAAGTCTTGGATTCATTCACAAAGACATACTGAGGGACACACAATGTGAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53568 True 609 lncRNA 0.44 3 10507950 10508752

Neighbor

gene id symbol gene type direction distance location
CI01000006_10363884_10364804 NA coding upstream 142379 10363796 ~ 10365571 (+)
CI01000006_10177090_10192651 NA coding upstream 314431 10177090 ~ 10193519 (+)
CI01000006_09998680_10008491 LHX5 coding upstream 498902 9998680 ~ 10009048 (+)
CI01000006_09918611_09921465 MZT2B coding upstream 586157 9918611 ~ 9921793 (+)
CI01000006_09910027_09913958 NA coding upstream 593846 9909370 ~ 9914104 (+)
CI01000006_10518326_10566504 SFSWAP coding downstream 9574 10518326 ~ 10566504 (+)
CI01000006_10574971_10578629 NA coding downstream 65856 10574608 ~ 10578964 (+)
CI01000006_10593624_10605226 NA coding downstream 84492 10593244 ~ 10606273 (+)
CI01000006_10707037_10743311 MMP17, MMP17A coding downstream 198192 10706944 ~ 10743594 (+)
CI01000006_10747943_10768998 ULK1B coding downstream 239191 10747943 ~ 10769038 (+)
G47148 NA non-coding upstream 12011 10493349 ~ 10495939 (+)
G47140 NA non-coding upstream 24785 10462462 ~ 10483165 (+)
G47106 NA non-coding upstream 26707 10403274 ~ 10481243 (+)
G47108 NA non-coding upstream 45526 10408876 ~ 10462424 (+)
G47102 NA non-coding upstream 147583 10343313 ~ 10360367 (+)
G47217 NA non-coding downstream 8959 10517711 ~ 10517922 (+)
G47218 NA non-coding downstream 57902 10566654 ~ 10567299 (+)
G47220 NA non-coding downstream 106573 10615325 ~ 10616018 (+)
G47213 NA non-coding downstream 156214 10664966 ~ 10672592 (+)
G47175 NA non-coding downstream 292834 10801586 ~ 10805053 (+)
G46652 NA other upstream 348699 10156579 ~ 10159251 (+)
G45416 NA other upstream 1673253 8818814 ~ 8834697 (+)
G45355 NA other upstream 2295562 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 2307805 8197881 ~ 8200145 (+)
G45336 NA other upstream 2485999 8019342 ~ 8021951 (+)
G47159 NA other downstream 907477 11416229 ~ 11521703 (+)
G47318 NA other downstream 1115515 11624267 ~ 11638252 (+)
G48094 NA other downstream 1768868 12277620 ~ 12279541 (+)
G48081 NA other downstream 1868254 12377006 ~ 12384827 (+)

Expression


Co-expression Network