rps15 (rps15,LOC107685215,LOC107578086)


Basic Information

Item Value
gene id rps15
gene name rps15,LOC107685215,LOC107578086
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 17027607 ~ 17031469 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240236.3
GAGGGCGCCTCTCACCGTCCGCGGGCCCCCAGCGGCTTTTTCAACGCGACCGAACCGCTGAACCTTCCTTTTCCGGCGAATCTCTCAAGATGGCGGACGTTGAGCAGAAGAAGAAGCGTACCTTCAGGAAGTTCACCTACAGAGGTGTGGACCTGGACCAGCTTTTGGACATGTCCTATGAGCAGCTCATGCAGCTGTACTGCGCTCGCCAGAGGAGGAGGTTGAACCGTGGGCTCAGAAGGAAGCAGCAGTCCCTTCTGAAGCGCCTCCGTAAGGCCAAGAAGGAGGCCCCTCCCATGGAGAAGCCTGAGGTGGTGAAGACCCATTTGAGAGACATGGTCATCCTGCCCGAGATGGTGGGCTCCATGGTCGGCGTGTACAACGGCAAGACCTTCAACCAGGTTGAAATTAAGCCTGAGATGATTGGTCACTACCTTGGAGAGTTCTCCATCACATACAAGCCAGTTAAGCACGGTCGTCCTGGTATTGGAGCCACCCACTCCTCTCGCTTCATTCCTCTGAAGTAAACAGtgattaatgtaaataaagtgaCTTCCAGGATATGCTaaa

Function

symbol description
rps15 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS15 (ribosomal protein S15).

NR:

description
PREDICTED: 40S ribosomal protein S15

GO:

id name namespace
GO:0006412 translation biological_process
GO:0009790 embryo development biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02958 RP-S15e, RPS15; small subunit ribosomal protein S15e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240236.3 True 570 mRNA 0.54 4 17027607 17031469

Neighbor

gene id symbol gene type direction distance location
gtpbp3 gtpbp3 coding downstream 56447 16953415 ~ 16971160 (-)
LOC103029569 NA coding downstream 96194 16910445 ~ 16931413 (-)
nr2f6 nr2f6,nr2f6b,LOC107680506,LOC107747262 coding downstream 129863 16888489 ~ 16897744 (-)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 coding downstream 142161 16882378 ~ 16885446 (-)
LOC103045418 LOC108437265 coding downstream 176158 16840156 ~ 16851449 (-)
dazap1 dazap1,LOC107757952 coding upstream 1891 17033360 ~ 17050341 (-)
ndufs7 ndufs7,LOC107680537,LOC107747413,LOC107685366,LOC107597168 coding upstream 26916 17058385 ~ 17064013 (-)
LOC103023655 LOC108435930,LOC107597167,LOC107757917 coding upstream 33845 17065314 ~ 17072285 (-)
LOC111192512 ctdspl3,LOC108435930,LOC108270532,LOC107757917,LOC107680535 coding upstream 33845 17065314 ~ 17067285 (-)
arid3a arid3a coding upstream 54448 17085917 ~ 17137959 (-)
G43302 NA non-coding downstream 77127 16944261 ~ 16950480 (-)
G43294 pole4,LOC107680508,LOC107747219,LOC107597157 non-coding downstream 171072 16852134 ~ 16856535 (-)
G43277 NA non-coding downstream 208396 16752965 ~ 16819211 (-)
G43276 NA non-coding downstream 278929 16747815 ~ 16748678 (-)
G43273 NA non-coding downstream 300135 16727260 ~ 16727472 (-)
G43340 NA non-coding upstream 42600 17074069 ~ 17081258 (-)
G43338 NA non-coding upstream 77034 17108503 ~ 17155642 (-)
G43422 NA non-coding upstream 209859 17241328 ~ 17241652 (-)
G43425 tmem38a,LOC107730482,LOC107751025 non-coding upstream 218727 17250196 ~ 17253786 (-)
G43432 NA non-coding upstream 258786 17290255 ~ 17291815 (-)
G43173 LOC108437262 other downstream 326255 16698949 ~ 16701352 (-)
LOC111192556 NA other downstream 1537886 15425387 ~ 15489721 (-)
G42894 NA other downstream 1611608 15415655 ~ 15415999 (-)
G42850 NA other downstream 1808785 15217957 ~ 15218822 (-)
socs7 socs7 other downstream 2060807 14949884 ~ 14966800 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 210895 17242364 ~ 17244709 (-)
LOC103042724 NA other upstream 2587954 19619423 ~ 19622153 (-)
oaz1 oaz1,LOC107655198,LOC107719576 other upstream 3054920 20086389 ~ 20090184 (-)
LOC103026129 LOC103026129,LOC105011584,LOC104949087,LOC106584418,LOC108439287,LOC105927846,LOC100708594 other upstream 3424912 20456381 ~ 20458320 (-)
LOC103027635 s1pr3a,LOC108439276,LOC107719654,LOC105927807,LOC101158267,LOC106584412 other upstream 3549809 20581278 ~ 20587592 (-)

Expression


Co-expression Network