tax1bp3 (tax1bp3,LOC107685157,LOC107747253,LOC107680510)


Basic Information

Item Value
gene id tax1bp3
gene name tax1bp3,LOC107685157,LOC107747253,LOC107680510
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16882378 ~ 16885446 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240228.3
GCTCTGCCCCCAGCATGTCATCTGCATGTTGTCATTCATGGGTGTAACCGCAGACCATCGGTCCTAAAAAACCTGAGAAGAGTTCATTGTTCGCTCGTTGAGGGAAAGGAAATCTTCtgtcattcattttaatatgtctTTCATACCGGGACAGCCTGTCACAGCTGTAGTGCAAAGGATAGAGATTCAAAAACTACGAGACGGTGATAATTTAATATTGGGTTTTAGCATTGGAGGGGGAATTGATCAAGACCCAGGTCAAAATCCATTCTCAGAAGACAAGACAGACAAGgGCATCTATGTCACAAGGGTGTCAAAGGGAGGTCCAGCAGAGGTCGCAGGCCTCATGATGGGAGATAAAATAATGCAGgTAAACGGCTGGGACATGACCATGGTGACTCATGACCAAGCGCGTAAAAGGCTAACAAAAAAGAATGAAGATGTAGTCAGGCTACTGGTGACCAGAAAATCTCTGCAGGATGCGGTTAGACAGTCCATGATGCCACACTAATAGCAATCTCTAACACTCCATTGAATGTCATTTGATAATCACACTACAGAATGtccttttttatatactgtaatccAACCAAATGCCAAAGAACAACAGTGAGCCATCATCTCAAAGACAGACTGAGTATTTGATTTGGGGTGATTTTTTACACCCCATAGGGGTGAATTTTCAATGTTTTCAAAAATAGTTCTGTGTGTTCAACACTAATGCTAAACAACTACTACATATAGCAGCAGTGTTACAGTGACAGTGTGAGTACAGATGATTGTCAATATGTAAATGATGTCCTATTCATTCATTGTTTGCAAGAACTATATGCAGCTACACTTAAAAACACTTATCAGTCATTgccttttgttttgcttttttttttccttcttagATTGATGTTGAGTAATGCCAAGGAACATGTGTATCAATTCTACATAAAGACCACTAATTTCTTtcctttatcatttttatacaaTGCTTATTTTCTTATGCATATActacttgttttgtttgttaattcCTAATTATTGCTGCCAAATTAACATGATTGTTTCTCTATAGCAGAATatcataaaagttttttttttttttgtgacacaaAATATCAACACTGTATTCCAATGATTTTCTACACTGTCTTTGATAGATTTTGGCATGTGGCTGTGTAAAAATATAGCtattttttccaataaaaaaatcattagtaG

Function

symbol description
tax1bp3 Acts upstream of or within convergent extension involved in axis elongation. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Is expressed in brain; eye; heart; and immature eye. Orthologous to human TAX1BP3 (Tax1 binding protein 3).

NR:

description
PREDICTED: tax1-binding protein 3

GO:

id name namespace
GO:0030111 regulation of Wnt signaling pathway biological_process
GO:0060028 convergent extension involved in axis elongation biological_process

KEGG:

id description
K24067 TAX1BP3; Tax1-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240228.3 True 1212 mRNA 0.37 4 16882378 16885446

Neighbor

gene id symbol gene type direction distance location
LOC103045418 LOC108437265 coding downstream 30929 16840156 ~ 16851449 (-)
ctns ctns coding downstream 82189 16795996 ~ 16800189 (-)
ranbp3 ranbp3 coding downstream 86991 16780198 ~ 16795387 (-)
vmac vmac,LOC107680554 coding downstream 175820 16702206 ~ 16706558 (-)
gadd45b gadd45b,LOC107597151,LOC107553537,LOC107680558 coding downstream 186256 16694001 ~ 16696122 (-)
nr2f6 nr2f6,nr2f6b,LOC107680506,LOC107747262 coding upstream 3043 16888489 ~ 16897744 (-)
LOC103029569 NA coding upstream 24999 16910445 ~ 16931413 (-)
gtpbp3 gtpbp3 coding upstream 67969 16953415 ~ 16971160 (-)
rps15 rps15,LOC107685215,LOC107578086 coding upstream 142161 17027607 ~ 17031469 (-)
dazap1 dazap1,LOC107757952 coding upstream 147914 17033360 ~ 17050341 (-)
G43294 pole4,LOC107680508,LOC107747219,LOC107597157 non-coding downstream 25843 16852134 ~ 16856535 (-)
G43277 NA non-coding downstream 63167 16752965 ~ 16819211 (-)
G43276 NA non-coding downstream 133700 16747815 ~ 16748678 (-)
G43273 NA non-coding downstream 154906 16727260 ~ 16727472 (-)
G43176 NA non-coding downstream 168977 16712734 ~ 16713401 (-)
G43302 NA non-coding upstream 58815 16944261 ~ 16950480 (-)
G43324 NA non-coding upstream 117392 17002838 ~ 17056900 (-)
G43340 NA non-coding upstream 188623 17074069 ~ 17081258 (-)
G43338 NA non-coding upstream 223057 17108503 ~ 17155642 (-)
G43422 NA non-coding upstream 355882 17241328 ~ 17241652 (-)
G43173 LOC108437262 other downstream 181026 16698949 ~ 16701352 (-)
LOC111192556 NA other downstream 1392657 15425387 ~ 15489721 (-)
G42894 NA other downstream 1466379 15415655 ~ 15415999 (-)
G42850 NA other downstream 1663556 15217957 ~ 15218822 (-)
socs7 socs7 other downstream 1915578 14949884 ~ 14966800 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 356918 17242364 ~ 17244709 (-)
LOC103042724 NA other upstream 2733977 19619423 ~ 19622153 (-)
oaz1 oaz1,LOC107655198,LOC107719576 other upstream 3200943 20086389 ~ 20090184 (-)
LOC103026129 LOC103026129,LOC105011584,LOC104949087,LOC106584418,LOC108439287,LOC105927846,LOC100708594 other upstream 3570935 20456381 ~ 20458320 (-)
LOC103027635 s1pr3a,LOC108439276,LOC107719654,LOC105927807,LOC101158267,LOC106584412 other upstream 3695832 20581278 ~ 20587592 (-)

Expression


Co-expression Network