ctns (ctns)


Basic Information

Item Value
gene id ctns
gene name ctns
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16795996 ~ 16800189 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240220.3
cctcccccctcctcccccaGGCTGAGCGTCGGCAGTCAGCTGACTGCGCTCATGTGACCAGGAAGAGCTGCGGCTCTGCTCCAATAAACAAACGAGCTGCGGGCCGTGGGGTCCACGCTCAAGATGACGGACACGGGTTTTATAAAAGCTCTTCTCCTCTCACTTTATGCACTGTTGACCCTTTGTGATGCAGACGTGATTCTAAGTGCTCCAACTTCAGTGAATTTAGAGGAGAGGTTTTCTAAAAACATCACCATCACAGCAAGcTCTCCCCTGAACATTACTGCAAACATCTACTTTAATGTAACATTTTCCTCTAACAATGACTCCTCGTCACTCATTCACCTTCCAGAAGAGGTAATTCTGTCAGCAGGAAACACATCAGTCACATTTGAAGTGCAAGCAAAGAAAGTTGGTCAAGTGACTGCATATCTGTTCAGCAACACCACTGACATCGAAAGCATGAGAACTCGAATAAGATTTCTGGTGGTAAGAAGCAATACTCTTGCTGTCATCAACCAAATTATTGGCTGGATCTACTTCCTGGCCTGGTCTATTTCCTTCTATCCTCAGGCGTATGAGAACTGGAGAAGAAAGAGTGTGGTGGGTCTGAACTTTGACTTCCTTGCATTGAATTTCACCGGATTTATTGCATACAGTGTCTTCAACATTGGCCTCTTTTGGATTCCTtacataaaaGAGGAATTCATACAAACTGAACCAAATGGAGTCAATCCTGTGGATGCCAATGATGTGTTCTTTAGTGTACATGCACTGGCTCTTACTCTTGTCTATATCTGCCAGTGTGTTTTGTATGAGAGAGGAGGACAACGAGTGTCCAGGGTGGCCATGTGTTTACTGGCGATTGGTTGGACGTTTGCCTTTGTCACGCTCTTTATAGCTGTTGGTAAAAAGATCACATGGCTGACCTACCTGTACTATTTCTCCTACATTAAATTGGGCGTCACACTGGTTAAATACATCCCCCAGGCTTACATGAACTACAAGAGAAAAAGCACAGAGGGCTGGAGCATTGGAAATGTGCTGCTGGATTTTACAGGAGGCAGTTTCAGCCTGCTTCAGATGTTCCTACAGTCTTATAACAACGATGAATGGAAGCTCATATTTGGAGACCCCACAAAGTTCGGATTGGGCCTCTTCTCAATATTTTTTGACGTGATATTTATAATTCAGCATTATTGCCTGTACCGCAATAAAGGCCCTGAGTATCAGGTACTAAGTACTGAAGAATAGACCAGGTGAGATGCAGTTCCTGTACAGTGGACCGTGCCTTACAGTAACATGATCTTTATAATAAGCTACCTCTCCTACAGTTCTGCAATGGACAACGAGGGCATGTTGGTAACAccacaacatatttaaacaaacaaaaaaaaactttttattacaCTGTCTTTATGCAAGCaatgttttttggttttattaacTGAAGGTGCATTATGAGACATCTACTGACGAAACCTGAAGTCTATGAAAGGgattaaaatagttattttttcttaatgaacTATAGTTGAAGCACTTGTATTGCTGACTATATTTTTGTAATCTTGTAAATATTAGAATTTATGATCTGAAAACTACACTTGTTTTATGGAAGCGTTTTTATTGATGCTGTTTTGTTAAACCAATAAAATGGCTCCTTTTTATTA

Function

symbol description
ctns Predicted to enable L-cystine transmembrane transporter activity. Acts upstream of or within glomerular filtration; regulation of autophagy; and renal absorption. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane. Used to study cystinosis. Human ortholog(s) of this gene implicated in cystinosis. Orthologous to human CTNS (cystinosin, lysosomal cystine transporter).

NR:

description
cystinosin-like

GO: NA

KEGG:

id description
K12386 CTNS; cystinosin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240220.3 True 1673 mRNA 0.41 11 16795996 16800189

Neighbor

gene id symbol gene type direction distance location
ranbp3 ranbp3 coding downstream 609 16780198 ~ 16795387 (-)
vmac vmac,LOC107680554 coding downstream 89438 16702206 ~ 16706558 (-)
gadd45b gadd45b,LOC107597151,LOC107553537,LOC107680558 coding downstream 99874 16694001 ~ 16696122 (-)
apc2 apc2 coding downstream 297491 16449767 ~ 16498505 (-)
LOC103041228 LOC103041228,LOC108437285 coding downstream 356537 16434528 ~ 16439459 (-)
LOC103045418 LOC108437265 coding upstream 39967 16840156 ~ 16851449 (-)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 coding upstream 82189 16882378 ~ 16885446 (-)
nr2f6 nr2f6,nr2f6b,LOC107680506,LOC107747262 coding upstream 88300 16888489 ~ 16897744 (-)
LOC103029569 NA coding upstream 110256 16910445 ~ 16931413 (-)
gtpbp3 gtpbp3 coding upstream 153226 16953415 ~ 16971160 (-)
G43276 NA non-coding downstream 47318 16747815 ~ 16748678 (-)
G43273 NA non-coding downstream 68524 16727260 ~ 16727472 (-)
G43176 NA non-coding downstream 82595 16712734 ~ 16713401 (-)
G43175 NA non-coding downstream 83518 16711722 ~ 16712478 (-)
G43140 NA non-coding downstream 265535 16515643 ~ 16530461 (-)
G43294 pole4,LOC107680508,LOC107747219,LOC107597157 non-coding upstream 51945 16852134 ~ 16856535 (-)
G43302 NA non-coding upstream 144072 16944261 ~ 16950480 (-)
G43324 NA non-coding upstream 202649 17002838 ~ 17056900 (-)
G43340 NA non-coding upstream 273880 17074069 ~ 17081258 (-)
G43338 NA non-coding upstream 308314 17108503 ~ 17155642 (-)
G43173 LOC108437262 other downstream 94644 16698949 ~ 16701352 (-)
LOC111192556 NA other downstream 1306275 15425387 ~ 15489721 (-)
G42894 NA other downstream 1379997 15415655 ~ 15415999 (-)
G42850 NA other downstream 1577174 15217957 ~ 15218822 (-)
socs7 socs7 other downstream 1829196 14949884 ~ 14966800 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 442175 17242364 ~ 17244709 (-)
LOC103042724 NA other upstream 2819234 19619423 ~ 19622153 (-)
oaz1 oaz1,LOC107655198,LOC107719576 other upstream 3286200 20086389 ~ 20090184 (-)
LOC103026129 LOC103026129,LOC105011584,LOC104949087,LOC106584418,LOC108439287,LOC105927846,LOC100708594 other upstream 3656192 20456381 ~ 20458320 (-)
LOC103027635 s1pr3a,LOC108439276,LOC107719654,LOC105927807,LOC101158267,LOC106584412 other upstream 3781089 20581278 ~ 20587592 (-)

Expression


Co-expression Network