G43175


Basic Information

Item Value
gene id G43175
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16711722 ~ 16712478 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU58220
ATGAGTCTTAATATCATTCATAGCTACAAACTGACAAGACCACACTAATCAAATAATGACACCTTCAAAagatttatttaagtaatatacaatattaacacAAAACCACAAAGTAAAGGCTTTACAGTTTGGGTGGCCCACTGAGCCTCCAGCCCTCCATCTTCCCCACTTTAGTGAGCCATGCCGCTACCCCCAGACCAAGACACGCTGTTGTGCCAGTCATAGCACTATGgTTCGAGCTCCAAGAAAGGCGCCTGCTGCGCATCCACCAATGAGGTAGTTAGTGGGGTCATCAGGAGCATCCCGAGCATGGGCACTCAGACAAGTGGCCATTCCAAATATCGCCCCCATGGTTGCTAAAAATGTCAGATTTCAACTGTTCTTATTATCATAGCATGAAATAAGTTCACATTGAATCTGTTCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58220 True 426 lncRNA 0.44 2 16711722 16712478

Neighbor

gene id symbol gene type direction distance location
vmac vmac,LOC107680554 coding downstream 5164 16702206 ~ 16706558 (-)
gadd45b gadd45b,LOC107597151,LOC107553537,LOC107680558 coding downstream 15600 16694001 ~ 16696122 (-)
apc2 apc2 coding downstream 213217 16449767 ~ 16498505 (-)
LOC103041228 LOC103041228,LOC108437285 coding downstream 272263 16434528 ~ 16439459 (-)
sgta sgta,LOC107656077 coding downstream 313471 16391403 ~ 16398251 (-)
ranbp3 ranbp3 coding upstream 67720 16780198 ~ 16795387 (-)
ctns ctns coding upstream 83518 16795996 ~ 16800189 (-)
LOC103045418 LOC108437265 coding upstream 127678 16840156 ~ 16851449 (-)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 coding upstream 169900 16882378 ~ 16885446 (-)
nr2f6 nr2f6,nr2f6b,LOC107680506,LOC107747262 coding upstream 176011 16888489 ~ 16897744 (-)
G43140 NA non-coding downstream 181261 16515643 ~ 16530461 (-)
G43118 thop1,mepd,LOC107658499,LOC107568058 non-coding downstream 307817 16399599 ~ 16403905 (-)
G43112 LOC108437281,LOC105896445 non-coding downstream 346559 16358638 ~ 16365163 (-)
G43077 NA non-coding downstream 398141 16313263 ~ 16313581 (-)
LOC111192511 NA non-coding downstream 449485 16260894 ~ 16262237 (-)
G43176 NA non-coding upstream 256 16712734 ~ 16713401 (-)
G43273 NA non-coding upstream 14782 16727260 ~ 16727472 (-)
G43276 NA non-coding upstream 35337 16747815 ~ 16748678 (-)
G43277 NA non-coding upstream 40487 16752965 ~ 16819211 (-)
G43294 pole4,LOC107680508,LOC107747219,LOC107597157 non-coding upstream 139656 16852134 ~ 16856535 (-)
G43173 LOC108437262 other downstream 10370 16698949 ~ 16701352 (-)
LOC111192556 NA other downstream 1222001 15425387 ~ 15489721 (-)
G42894 NA other downstream 1295723 15415655 ~ 15415999 (-)
G42850 NA other downstream 1492900 15217957 ~ 15218822 (-)
socs7 socs7 other downstream 1744922 14949884 ~ 14966800 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 529886 17242364 ~ 17244709 (-)
LOC103042724 NA other upstream 2906945 19619423 ~ 19622153 (-)
oaz1 oaz1,LOC107655198,LOC107719576 other upstream 3373911 20086389 ~ 20090184 (-)
LOC103026129 LOC103026129,LOC105011584,LOC104949087,LOC106584418,LOC108439287,LOC105927846,LOC100708594 other upstream 3743903 20456381 ~ 20458320 (-)
LOC103027635 s1pr3a,LOC108439276,LOC107719654,LOC105927807,LOC101158267,LOC106584412 other upstream 3868800 20581278 ~ 20587592 (-)

Expression


Co-expression Network