LOC111192511


Basic Information

Item Value
gene id LOC111192511
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16260894 ~ 16262237 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649946.1
TTCCCCTcaatcagtctctctctctctctctgcgtgcTCTGGAGGAAGAAGCTGTGCCCCAAAGTCAGCTAGAAAGCTGTGTCTCACAGTTAGCTTAGGAAAGTGACCAAAATAAGCCTCTTTTGATAAAAGAGTGAACTATTTAAAGCTAGAAGCATCACCTGTCCATCTAATGGGCTGGAAATTCGTGAATTGTGCAAAAACCTGACCTATGAACACCGACTATCTGCTGAAGCTGGTTCTAGAGCTATTGAGAGTAAAGGACCAAAAAGGATACCCGTTCATCCAAGAGGTATATTTCCAATaagttgtgtgtaatgtgtgtaaagaAAAGAACTGCCCTTGTTGATTTTTTTGAAAGGTTTATTGAAGTTTATATGTACattgtaatatgttgtgtaGCATTAGAACCtgtgaaaagagaaaaaagttgtgtaaatactgtttaaacATATGCTagaatacaagaaaaaaaaagtaaaatacttaCCTGTTACGTTCCTGTAAAATCTGTAAAGGGAAATGTTAATACTGTTAATaagaggttttattttatattaaggaAATTATTTGGGGTTATATGTTGAACTGAATGTGACTACAGAGTAATGGTCAGTGATATTTAGAAGTAATAGTTTCTGTACCTGCTTGCTTAAGCAGGTCAGGTTTTTTTGAGGGCGCTGGAAACCTGGGAGAGAAGATTCCCTCAGCCTGACTTCGGACCCTCTTCTGTGAAAGCGATGGCGAGCCACCCAAAGGAGAACTGAGCTAAAAGACTACTCTTGAGTCCATTTCAAATTACCTGGTCATGTGGTAGGACAAAGAAAAGTGATTGAGAGACtgagcttattttattttaattttattttattttatttattgtttcaacacatttgtatttgtttattgtgggtttactgatttactgaagTTGTTGGGTTATTGAAAAAAGTAGAACTAAAGGTGTATATTCTGaactaaattatattagtggatCTAAGTAAACAAATTAACTAAACTAGCAACtaatagtaaattaaataatattaaactctgtcagtgtaaaagttTAAAGTATAAATAGCTAAACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649946.1 True 1092 lncRNA 0.35 2 16260894 16262237

Neighbor

gene id symbol gene type direction distance location
tmem259 tmem259,LOC107602804,LOC107723848,LOC107656092 coding downstream 456558 15788715 ~ 15804336 (-)
LOC103031895 NA coding downstream 777492 15481435 ~ 15483402 (-)
mast3 mast3 coding downstream 916266 15309576 ~ 15344628 (-)
LOC103028830 LOC108438687 coding downstream 995359 15258569 ~ 15265535 (-)
LOC103026677 LOC108438650,LOC108270818,LOC107723066 coding downstream 1055643 15174059 ~ 15205251 (-)
LOC103037800 slc1a8a,LOC108437258,LOC107753804,LOC107674556,LOC105011368,LOC105896421,LOC108271187 coding upstream 103872 16366109 ~ 16383428 (-)
slc39a3 slc39a3,LOC106613601 coding upstream 121277 16383514 ~ 16389369 (-)
sgta sgta,LOC107656077 coding upstream 129166 16391403 ~ 16398251 (-)
LOC103041228 LOC103041228,LOC108437285 coding upstream 172291 16434528 ~ 16439459 (-)
apc2 apc2 coding upstream 187530 16449767 ~ 16498505 (-)
LOC111192510 NA non-coding downstream 7182 16252618 ~ 16253712 (-)
LOC111192565 NA non-coding downstream 16570 16228431 ~ 16244324 (-)
LOC111192509 NA non-coding downstream 44711 16184428 ~ 16216183 (-)
G43051 NA non-coding downstream 60848 16145038 ~ 16200046 (-)
G43041 NA non-coding downstream 219875 16038944 ~ 16041019 (-)
G43077 NA non-coding upstream 51026 16313263 ~ 16313581 (-)
G43112 LOC108437281,LOC105896445 non-coding upstream 96401 16358638 ~ 16365163 (-)
G43118 thop1,mepd,LOC107658499,LOC107568058 non-coding upstream 137362 16399599 ~ 16403905 (-)
G43140 NA non-coding upstream 253406 16515643 ~ 16530461 (-)
G43175 NA non-coding upstream 449485 16711722 ~ 16712478 (-)
LOC111192556 NA other downstream 771173 15425387 ~ 15489721 (-)
G42894 NA other downstream 844895 15415655 ~ 15415999 (-)
G42850 NA other downstream 1042072 15217957 ~ 15218822 (-)
socs7 socs7 other downstream 1294094 14949884 ~ 14966800 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other downstream 1399556 14860554 ~ 14861338 (-)
G43173 LOC108437262 other upstream 436712 16698949 ~ 16701352 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 980127 17242364 ~ 17244709 (-)
LOC103042724 NA other upstream 3357186 19619423 ~ 19622153 (-)
oaz1 oaz1,LOC107655198,LOC107719576 other upstream 3824152 20086389 ~ 20090184 (-)
LOC103026129 LOC103026129,LOC105011584,LOC104949087,LOC106584418,LOC108439287,LOC105927846,LOC100708594 other upstream 4194144 20456381 ~ 20458320 (-)

Expression


Co-expression Network