G43176


Basic Information

Item Value
gene id G43176
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16712734 ~ 16713401 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU58221
CCAAGGATGgtttaataaattacaaatcATGTAAATGCAATGCTTGATTGTGTTAACAATTATGATTAATCTATGTGTGTTGCTGTGGGCTGTGCTGTAACACCACTGTGTGGAAAAGTGAGTGTGTTTCACTGTTGAGCAGTATCTCCATCTTGTGGCAAAAATAGATAATGTCCAAAATGAACTAGCTGCCCATGCGACCagaaaaaatacaagcagtcTCAACTGTTTAATTTACAATTGATCATGTCATATAATTTAGTCTGGATTGATTCTTAATAACACTGTCGGCAGACACGTTTACACTTGGTACTTAAATGCAAGTATTGCCTGTATCTTGGTTGTCAAATGCATTTGAGATATGTTTACACTggtaaaatgttataataaaatacCTCCTAAGTGGTTTGATTGgatttaaatctgtttaaatgtgtcttggtTTATGACTACACTTGCATGTTTTATGTGGCTTGGCCATACCCAAATGTAATCCTTATACTCAAGATGCATGTGCACAGGATCTTGTGCACAAACCTGTACCATTTACTCCTCTATTGATCAATTAAAGTGCCcatattctaatttattcttGTATGTTATCAACTAAACATTTACAATTCAGTCATAATCCCAGAgcaaaaaatagtatttttttaaatcttcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58221 True 668 lncRNA 0.34 1 16712734 16713401

Neighbor

gene id symbol gene type direction distance location
vmac vmac,LOC107680554 coding downstream 6176 16702206 ~ 16706558 (-)
gadd45b gadd45b,LOC107597151,LOC107553537,LOC107680558 coding downstream 16612 16694001 ~ 16696122 (-)
apc2 apc2 coding downstream 214229 16449767 ~ 16498505 (-)
LOC103041228 LOC103041228,LOC108437285 coding downstream 273275 16434528 ~ 16439459 (-)
sgta sgta,LOC107656077 coding downstream 314483 16391403 ~ 16398251 (-)
ranbp3 ranbp3 coding upstream 66797 16780198 ~ 16795387 (-)
ctns ctns coding upstream 82595 16795996 ~ 16800189 (-)
LOC103045418 LOC108437265 coding upstream 126755 16840156 ~ 16851449 (-)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 coding upstream 168977 16882378 ~ 16885446 (-)
nr2f6 nr2f6,nr2f6b,LOC107680506,LOC107747262 coding upstream 175088 16888489 ~ 16897744 (-)
G43175 NA non-coding downstream 256 16711722 ~ 16712478 (-)
G43140 NA non-coding downstream 182273 16515643 ~ 16530461 (-)
G43118 thop1,mepd,LOC107658499,LOC107568058 non-coding downstream 308829 16399599 ~ 16403905 (-)
G43112 LOC108437281,LOC105896445 non-coding downstream 347571 16358638 ~ 16365163 (-)
G43077 NA non-coding downstream 399153 16313263 ~ 16313581 (-)
G43273 NA non-coding upstream 13859 16727260 ~ 16727472 (-)
G43276 NA non-coding upstream 34414 16747815 ~ 16748678 (-)
G43277 NA non-coding upstream 39564 16752965 ~ 16819211 (-)
G43294 pole4,LOC107680508,LOC107747219,LOC107597157 non-coding upstream 138733 16852134 ~ 16856535 (-)
G43302 NA non-coding upstream 230860 16944261 ~ 16950480 (-)
G43173 LOC108437262 other downstream 11382 16698949 ~ 16701352 (-)
LOC111192556 NA other downstream 1223013 15425387 ~ 15489721 (-)
G42894 NA other downstream 1296735 15415655 ~ 15415999 (-)
G42850 NA other downstream 1493912 15217957 ~ 15218822 (-)
socs7 socs7 other downstream 1745934 14949884 ~ 14966800 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 528963 17242364 ~ 17244709 (-)
LOC103042724 NA other upstream 2906022 19619423 ~ 19622153 (-)
oaz1 oaz1,LOC107655198,LOC107719576 other upstream 3372988 20086389 ~ 20090184 (-)
LOC103026129 LOC103026129,LOC105011584,LOC104949087,LOC106584418,LOC108439287,LOC105927846,LOC100708594 other upstream 3742980 20456381 ~ 20458320 (-)
LOC103027635 s1pr3a,LOC108439276,LOC107719654,LOC105927807,LOC101158267,LOC106584412 other upstream 3867877 20581278 ~ 20587592 (-)

Expression


Co-expression Network