G77894 (rcor1,LOC107719500,LOC107590914,LOC107733187)


Basic Information

Item Value
gene id G77894
gene name rcor1,LOC107719500,LOC107590914,LOC107733187
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3310420 ~ 3318565 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105044
GGGTGAAGTTGGGCAGGTCCGCCAAAGACTTTTCGATGTTGTGCTTGTGCCAGAAGAGCATGCCCAATGcCTGCTCCATATTGTACCCATGTTTCTCTTTGGCGATTGCAATGTATTCATCCAATTTAGTCTCTGCCAAGTTCTGGTTGGGAATCCAGACCAGCATTCCCAAGTTCTCCCTCTCTTGGCTTGCCTTTGCTACCTCGGGGTCATAATCCGGGACCACTGCCTGGTACTGAGGACCCACTCGCATTCCTCCCGCACCACCATGCTCGTCATCACTTGAGGAGCCCGAACTTCCTTCCTCCCACGAATTGTTACTGTTCCCGTTCGAAGTGAAACTTTTGACCGGGTTGTTTACCGAGTTCCTGCCTCTCCTCTTGCCCGAGATCTCCGCCGGGCCCTTCTCCAACATCGCGGG
>TU105046
TTaagattttactgttaaaactcTAAATAAGGACATAAAAGAATCTCGGGAGTGATTTTAGGTTAAAACAACATCAGAGCCATCTGCTCCAACTGGAGAAAGTATCTGAACAACGGGTGTGTTCGAGGCTACCACAGCCCGTGCAGTATTGTGTCGTTGGAGCTGAGAGAAGTGAATTTCCACACACCGGGGTCATAATCCGGGACCACTGCCTGGTACTGAGGACCCACTCGCATTCCTCCCGCACCACCATGCTCGTCATCACTTGAGGAGCCCGAACTTCCTTCCTCCCACGAATTGTTACTGTTCCCGTTCGAAGTGAAACTTTTGACCGGGTTGTTTACCGAGTTCCTGCCTCTCCTCTTGCCCGAGATCTCCGCCGGGCCCTTCTCCAACATCGCGGG

Function

symbol description
rcor1 Predicted to enable transcription corepressor activity. Acts upstream of or within hemopoiesis and regulation of retinoic acid biosynthetic process. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex and transcription regulator complex. Is expressed in eye; head; intestine; and optic tectum. Orthologous to human RCOR1 (REST corepressor 1).

NR:

description
PREDICTED: cathepsin S-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105044 True 421 lncRNA 0.54 5 3310420 3318565
TU105046 False 404 lncRNA 0.50 2 3310420 3310923

Neighbor

gene id symbol gene type direction distance location
ankrd9 NA coding downstream 6853 3302159 ~ 3303567 (-)
LOC103025229 acta1,act2,LOC105024319,LOC108430668,LOC102689871 coding downstream 405772 2900144 ~ 2904648 (-)
LOC103024903 LOC108430667 coding downstream 414739 2881109 ~ 2895681 (-)
LOC103025537 LOC108430628,LOC108269477,LOC107745352,LOC107711907 coding downstream 434784 2869496 ~ 2875636 (-)
LOC111193124 LOC108270491,LOC108234815 coding downstream 558164 2673416 ~ 2752256 (-)
strn3 strn3,LOC106611207,LOC107590905 coding upstream 562754 3881319 ~ 3909337 (-)
hectd1 hectd1,LOC107582380,LOC107733112,LOC107697712,LOC107719534,LOC107694830,LOC100380626 coding upstream 599091 3917656 ~ 3952193 (-)
heatr5a heatr5a,LOC108412624,LOC107697711,LOC107733168 coding upstream 637761 3956326 ~ 3991775 (-)
mis18bp1 NA coding upstream 675995 3994560 ~ 4006610 (-)
mdga2 mdga2,mamdc1 coding upstream 728498 4047063 ~ 4277821 (-)
G77891 NA non-coding downstream 13092 3296348 ~ 3297328 (-)
G77888 tecpr2 non-coding downstream 25743 3270756 ~ 3284677 (-)
G77801 NA non-coding downstream 97267 3212929 ~ 3213153 (-)
G77779 NA non-coding downstream 203835 3106385 ~ 3106585 (-)
G77777 NA non-coding downstream 218792 3000586 ~ 3091628 (-)
G77902 traf3,LOC107719479,LOC107697656,LOC107590913 non-coding upstream 37965 3356530 ~ 3359703 (-)
G77912 NA non-coding upstream 75784 3394349 ~ 3394904 (-)
G77919 sptbn5 non-coding upstream 111600 3430165 ~ 3431406 (-)
G77941 NA non-coding upstream 196131 3514696 ~ 3515280 (-)
LOC111193169 NA non-coding upstream 253458 3572023 ~ 3620248 (-)
bmf bmf other downstream 103734 3175798 ~ 3206686 (-)
LOC103029757 LOC108430670,LOC108269994 other downstream 265657 2964024 ~ 3044763 (-)
G77656 NA other downstream 1119767 2190313 ~ 2190653 (-)
gchfr gchfr other downstream 1155072 2150788 ~ 2155348 (-)
LOC111193168 NA other downstream 1263179 2042959 ~ 2047241 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other upstream 326532 3645097 ~ 3714357 (-)
G78023 scfd1 other upstream 515997 3834562 ~ 3840570 (-)
G78083 NA other upstream 726869 4045434 ~ 4206384 (-)
G78297 kdm1a other upstream 1866227 5184792 ~ 5186358 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 3880344 7198909 ~ 7220854 (-)

Expression


Co-expression Network