RNA id: TU105044


Basic Information

Item Value
RNA id TU105044
length 421
lncRNA type inter_gene
GC content 0.54
exon number 5
gene id G77894
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3310420 ~ 3318565 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGTGAAGTTGGGCAGGTCCGCCAAAGACTTTTCGATGTTGTGCTTGTGCCAGAAGAGCATGCCCAATGcCTGCTCCATATTGTACCCATGTTTCTCTTTGGCGATTGCAATGTATTCATCCAATTTAGTCTCTGCCAAGTTCTGGTTGGGAATCCAGACCAGCATTCCCAAGTTCTCCCTCTCTTGGCTTGCCTTTGCTACCTCGGGGTCATAATCCGGGACCACTGCCTGGTACTGAGGACCCACTCGCATTCCTCCCGCACCACCATGCTCGTCATCACTTGAGGAGCCCGAACTTCCTTCCTCCCACGAATTGTTACTGTTCCCGTTCGAAGTGAAACTTTTGACCGGGTTGTTTACCGAGTTCCTGCCTCTCCTCTTGCCCGAGATCTCCGCCGGGCCCTTCTCCAACATCGCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105038 lncRNA downstream 13092 3296348 ~ 3297328 (-) True G77891
TU105035 lncRNA downstream 25743 3270756 ~ 3284677 (-) True G77888
TU104925 lncRNA downstream 97267 3212929 ~ 3213153 (-) True G77801
TU104901 lncRNA downstream 203835 3106385 ~ 3106585 (-) True G77779
TU104899 lncRNA downstream 218792 3000586 ~ 3091628 (-) True G77777
TU105054 lncRNA upstream 37965 3356530 ~ 3359703 (-) True G77902
TU105070 lncRNA upstream 75784 3394349 ~ 3394904 (-) True G77912
TU105078 lncRNA upstream 111600 3430165 ~ 3431406 (-) True G77919
TU105102 lncRNA upstream 196131 3514696 ~ 3515280 (-) True G77941
XR_002650299.1 lncRNA upstream 253458 3572023 ~ 3620248 (-) True LOC111193169
XM_007257936.3 mRNA downstream 6853 3302159 ~ 3303567 (-) True ankrd9
XM_022672601.1 mRNA downstream 103734 3175798 ~ 3206686 (-) True bmf
XM_007257920.3 mRNA downstream 103739 3175798 ~ 3206681 (-) False bmf
XM_022672599.1 mRNA downstream 265657 2966898 ~ 3044763 (-) False LOC103029757
XM_022672598.1 mRNA downstream 265657 2966898 ~ 3044763 (-) False LOC103029757
XM_022672608.1 mRNA upstream 326532 3645097 ~ 3714357 (-) True prkd1
XM_022672609.1 mRNA upstream 326532 3645097 ~ 3714016 (-) False prkd1
XM_022672614.1 mRNA upstream 562754 3881319 ~ 3909337 (-) False strn3
XM_022672612.1 mRNA upstream 562754 3881319 ~ 3909335 (-) True strn3
XM_007257905.3 mRNA upstream 599091 3917656 ~ 3952193 (-) False hectd1
TU104917 other downstream 104204 3197129 ~ 3206216 (-) False bmf
TU104742 other downstream 1119767 2190313 ~ 2190653 (-) True G77656
TU104721 other downstream 1155080 2150788 ~ 2155340 (-) True gchfr
XR_002650301.1 other upstream 314529 3633094 ~ 3638915 (-) True LOC111193170
TU105108 other upstream 373042 3691607 ~ 3714277 (-) False prkd1
TU105210 other upstream 515997 3834562 ~ 3840570 (-) True G78023
TU105293 other upstream 726869 4045434 ~ 4206384 (-) True G78083
TU105554 other upstream 1866227 5184792 ~ 5186358 (-) True G78297

Expression Profile