G77902 (traf3,LOC107719479,LOC107697656,LOC107590913)


Basic Information

Item Value
gene id G77902
gene name traf3,LOC107719479,LOC107697656,LOC107590913
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3356530 ~ 3359703 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105054
cattatacattaaaaaaaaaacaacttgtgcaaaactgtcactCGCTCTTTAGAAAGTGATCTGATTATTTGTAAATGTGTGTCTCTGCATGGATGCAGACTCGAAAGCTAGTATTTCAAAATggtgttaaaaaaagaacaatatatCCCGATGCACAGCATCATCAATGTTTAACATTACCAAAAATAATGTGTCAATATAGTAAACACAGTTGGGAGGTTAGCTCATGTAAGTATTGTAGGTTTTACATGcagaaaaatctttttttttttttttttttttttttgcccccaTACTGAGGGAGCTCTAGCACAGTTATTAGTGCTCAACTTACATCCTCATGCTTTCCTTCCCCGGTTCCATCAACACAAATTTGCCACTACCACTGCCTGCAAACACGACACATCCTACTCACGAAAGTCTGCTCTATATGGACTCATCCGAACATTTATACACTTAACAATGCTTTATTAAAACATCCAATTGTCACTGAATACAACCAAATACAAGGCATCTCTTGTTCGTTAAATATATAGACTTCGCTGCTGATGTGTggaacagttttatttattatttcaggcGCCTCCTCACATTGTCAGTTAACCCCAGCACTACCATCAAATgcactttttgtttaattaattagagTTGCtcttctctgctcttctctgtGTGAACACCATAACCACAGGCCGTAGACCTTCACTACCCTGGCAAATGAACACGATCCATTCCATCcgtccatttatccatccatccaaccatcttCCAACAAACGGCGACCTTAAAAAGACCACACCTCACACATCTTCTGGACCAGAACTCTGAGACCGGGGGACTCTCAGGACTCACTTGTGTGTATCTCTCTTCATTCTCTGCCCTGGATCCAGCTCCTCTCCGTTTTCCACCCCCGTGGCCTACTGACGTCCACACTGAGCACCAGGCCCTTGGGACTAGAAGCGAATGGGCTAGCCTGACCTTCACGGGTCGGGTAAGTCAGACGTGTCCACCGTGACCTTGATGAAGATGGTGTCGTCCTTGATGTAAGTGCCGTTTTCCAACACGGTCTGGGCCACGAAGAGCGGGCAGCCCGAGGCAATGTTCATCTCTCCGGTGGGCCGGCGGAAGCTACTGCTGTTGGGATCAGGCTTGAAGGCGTCACCCAGGTGTTTGCGTGCCGGGCCTTGATCCATCAGCATGAGCGTCACCTTCTGCTTGAAGGGCCAGGGCAGCAGGGCGTCGTACTCGCCGCGCATCACCACGAAGAACAGCGACAGGTGAGTGCCCTTGCCCATGCCGTCTCCGTTCAGGTAGACGCGGGCGCACATCTTGTAGCCGAAGTAGCCGGTGTAGAAGGGCTGGCTGTAGAGCGAGAGCGTCTTGGAGGCCACAGCTTCTGCTTTCCGCCTCTTGTAGTCGCGGATCTTCCAGATGAGCGTGCCGTTGAAGCTGGCCGTCTCCAGAACCTGCAGCTTCAGGTCCATGTCCGCCAGCCGGATGTCGTGGACACTAAGCATCTGGTCGTGACTCGACAGCTGCTCATCTAAGGAGGCTGGAGAAGagaaattacagatgaagccagagagcggtgagtactgtttcctacaccttggactcttggaaactgaagaaaaaaaactgctacaggaagacgtctggctgacccacatggcaacaacaGCTttatttagcctttagctcagattaacatgactggactaagtctcagttttagcagtgaagagaagattTAGAGTTAGTCTGACAGGTAAAGAAGTGTAAtaagtaataaagtcattgctaagatgagaaaatattgtttttagtaatctactaaaatgaacattgtggagAAGGTTTTTGATTAGTGCTGGTTATTTGACTGCTGGTTTCTTGTCAGTAAAATATATCTATCTACCAGGATATATGGTCATGTTCtactaaaaccttttttttctcaacactgaaaaaaaatgtattggttgCTCACAAACCTGTGACTCGCATTGTTTATTCACAACTCAGTGAGATTACTTATCTCTTTTTGGCTAAACTAATGGCTGTTCTTACCCAGGGTAAGTGTACCAGCACCGGTTCGGGCAGAGTCGAGAGATGCTACCATAGAGCGCATGCTCTCCACAGCTCCCCTCAAAAGCTTCCACTTCATCCCTCATCGCCCTCAGTGGCCGCAGGTCCCGCAGCTCCATCTCCACCTCCAGGAGCTTCTCTGAGTGAGAACTCATCAGCTTCTAAACACACAAGAACATAGAAACAAAGACAagaagttaatttttttttttttttgcatatgcaAATCCCTCAACCACCCCCACCCTTACccttacataataataaaatgataatttactttatttatatagcacctttcatacattcAAATGTAGCGCAGAGTGTTGTACATACAAACAGGAGCACAAAACACCAGTAAAACAAAACAGTTCAGATTATtagtaattattaaatattttaaacgaatttaaa

Function

symbol description
traf3 Predicted to enable tumor necrosis factor receptor binding activity and ubiquitin protein ligase binding activity. Acts upstream of or within response to yeast. Predicted to be located in cytoplasm. Predicted to be active in cytoplasmic side of plasma membrane. Human ortholog(s) of this gene implicated in brain disease. Orthologous to human TRAF3 (TNF receptor associated factor 3).

NR:

description
PREDICTED: glutamate receptor 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105054 True 2503 lncRNA 0.44 2 3356530 3359703

Neighbor

gene id symbol gene type direction distance location
ankrd9 NA coding downstream 52963 3302159 ~ 3303567 (-)
LOC103025229 acta1,act2,LOC105024319,LOC108430668,LOC102689871 coding downstream 451882 2900144 ~ 2904648 (-)
LOC103024903 LOC108430667 coding downstream 460849 2881109 ~ 2895681 (-)
LOC103025537 LOC108430628,LOC108269477,LOC107745352,LOC107711907 coding downstream 480894 2869496 ~ 2875636 (-)
LOC111193124 LOC108270491,LOC108234815 coding downstream 604274 2673416 ~ 2752256 (-)
strn3 strn3,LOC106611207,LOC107590905 coding upstream 521616 3881319 ~ 3909337 (-)
hectd1 hectd1,LOC107582380,LOC107733112,LOC107697712,LOC107719534,LOC107694830,LOC100380626 coding upstream 557953 3917656 ~ 3952193 (-)
heatr5a heatr5a,LOC108412624,LOC107697711,LOC107733168 coding upstream 596623 3956326 ~ 3991775 (-)
mis18bp1 NA coding upstream 634857 3994560 ~ 4006610 (-)
mdga2 mdga2,mamdc1 coding upstream 687360 4047063 ~ 4277821 (-)
G77894 rcor1,LOC107719500,LOC107590914,LOC107733187 non-coding downstream 37965 3310420 ~ 3318565 (-)
G77891 NA non-coding downstream 59202 3296348 ~ 3297328 (-)
G77888 tecpr2 non-coding downstream 71853 3270756 ~ 3284677 (-)
G77801 NA non-coding downstream 143377 3212929 ~ 3213153 (-)
G77779 NA non-coding downstream 249945 3106385 ~ 3106585 (-)
G77912 NA non-coding upstream 34646 3394349 ~ 3394904 (-)
G77919 sptbn5 non-coding upstream 70462 3430165 ~ 3431406 (-)
G77941 NA non-coding upstream 154993 3514696 ~ 3515280 (-)
LOC111193169 NA non-coding upstream 212320 3572023 ~ 3620248 (-)
LOC111193170 NA non-coding upstream 273391 3633094 ~ 3638915 (-)
G77892 NA other downstream 7541 3297582 ~ 3348989 (-)
bmf bmf other downstream 149844 3175798 ~ 3206686 (-)
LOC103029757 LOC108430670,LOC108269994 other downstream 311767 2964024 ~ 3044763 (-)
G77656 NA other downstream 1165877 2190313 ~ 2190653 (-)
gchfr gchfr other downstream 1201182 2150788 ~ 2155348 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other upstream 285394 3645097 ~ 3714357 (-)
G78023 scfd1 other upstream 474859 3834562 ~ 3840570 (-)
G78083 NA other upstream 685731 4045434 ~ 4206384 (-)
G78297 kdm1a other upstream 1825089 5184792 ~ 5186358 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 3839206 7198909 ~ 7220854 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000635 NA misc CM030141.1 CM030141.1 20744379 ~ 20752657 (-)