G85308


Basic Information

Item Value
gene id G85308
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 32092153 ~ 32093023 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114897
tttttaggagagatataagttgtgtgtaaatatttataagacaatacctgacaaaatctgttttaatgacgttaataaacatcactgtgacagcgctagtcacagtttcaccacatcacttatctaaccagcctgtactgatttctgccccccaataatgctttcaataacctctaatagcctttaatagtcttcactaaactccgtagttataaacatcctgaggttagcagcgcgctaactgacctgtttataatgtaatccgagcagtgactccgtgacgctgctctaaactgctgctgttagctgcttgggctgaaagatgaactgtagtgagctgtattatccggttagtggggttaaaacctttatttgtttacagaaacagtaaaaacggactggctgagccctgtagcccgtggctgggctgtactgaagtagtgactgagtgaagagagcggggcttgtgctgctgctgcagctccgactagtggttggatgaagaactgcagcttcatgtaagtgagcagtttcaccagccatccacacacagctctgataaactgcttgttttaatagtgcacactgttgctaccaaaaaaagtcactagatggcattaccatatatatcttaataaataataataataatatttataatatttataataataataataataataaatatattatttaaattttatgaggcataaaataataacaagaaaaaaaaacaagaaaatcgagaatcgaatcgaatcgtgaccctcaaatcgaaaatgaaatcgaatcgaggatttagagaatcgtgacacccctaataataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114897 True 830 lncRNA 0.37 2 32092153 32093023

Neighbor

gene id symbol gene type direction distance location
gprc6a NA coding downstream 195938 31884102 ~ 31896215 (-)
trnar-ucg_5 NA coding downstream 238778 31853303 ~ 31853375 (-)
zufsp NA coding downstream 256694 31823577 ~ 31835459 (-)
klhl32 klhl32 coding downstream 304021 31764867 ~ 31788132 (-)
LOC111193154 NA coding downstream 392049 31653142 ~ 31700104 (-)
LOC103035758 LOC108441230 coding upstream 233950 32326973 ~ 32338871 (-)
LOC103036077 LOC108441231,LOC105890366 coding upstream 247351 32340374 ~ 32345483 (-)
rhbdl2 rhbdl2,LOC108280367,LOC106605138 coding upstream 263067 32356090 ~ 32372487 (-)
akirin1 akirin1,LOC107700743,LOC107730931,LOC107704951 coding upstream 282306 32375329 ~ 32391430 (-)
LOC103036987 LOC103036987 coding upstream 301636 32394659 ~ 32401169 (-)
G85297 NA non-coding downstream 77816 32001852 ~ 32014337 (-)
G85296 NA non-coding downstream 93497 31998330 ~ 31998656 (-)
G85278 NA non-coding downstream 116856 31974919 ~ 31975297 (-)
G85231 NA non-coding downstream 178430 31913123 ~ 31913723 (-)
G85227 NA non-coding downstream 194941 31813662 ~ 31897212 (-)
G85309 NA non-coding upstream 25540 32118563 ~ 32119049 (-)
G85331 NA non-coding upstream 117093 32210116 ~ 32214110 (-)
G85333 NA non-coding upstream 123676 32216699 ~ 32218768 (-)
G85334 NA non-coding upstream 125815 32218838 ~ 32220000 (-)
LOC111193247 NA non-coding upstream 194539 32287562 ~ 32289944 (-)
mrpl34 mrpl34 other downstream 1269455 30820119 ~ 30822698 (-)
LOC103036386 camk2n2,LOC107659987,LOC107557885 other downstream 1508332 30579943 ~ 30583821 (-)
map6d1 LOC108428296 other downstream 1736433 30334038 ~ 30355720 (-)
G84663 LOC100707891,LOC103372284 other downstream 2017216 30008627 ~ 30074937 (-)
hpcal1 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378,LOC106607246 other downstream 2161578 29858977 ~ 29930575 (-)
LOC111193156 NA other upstream 356608 32449631 ~ 32491820 (-)
G85501 NA other upstream 1018451 33111474 ~ 33111734 (-)
G85550 NA other upstream 1416657 33509680 ~ 33518671 (-)
G85618 slc4a1ap other upstream 1740989 33834012 ~ 33839629 (-)
rbks rbks,LOC107553733,LOC107656748 other upstream 1862172 33955195 ~ 34012562 (-)

Expression


Co-expression Network