LOC111193156


Basic Information

Item Value
gene id LOC111193156
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 32449631 ~ 32491820 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115032
TTAAGATGATTTTAATACAGTAGGATGTTGCAGGAAATGCGGCCCAGGTCAGTCTAATTTGTTTATCAGCTCCAGCCTACATTTCTCCTAAAGCTGTAACAGCTTCTTCCTCATTCAGCGTCCAGCACTTCATCAGATCTCCTGACTGCAGTCTAGAACAGTTCTAATGTTGTATGTTAAACCCACACGCCACTGATTCTGGTGGAAGTGTTTGGTGAAAATATGGCAACCATCCTGATCTTCCTCCTCCTGGTCCTCTTCCCAGACTTTTCTTCTGCAGAACAAAGTCCTCTCAGAACTTTCCATCTCATTGTGAAGAAGCCAGGGTTCAACAATCAGTCTGTAGCTCGAGCAGCTTGTAGAGAGAACTACACTGATCTGGTCACTGTGTGCAGTGAAGAagagaacactgcactgattaatCTGATCAACAGTAATGTCTGGATTGGTCTTCAGCGCAGTCAGTTCAGTTCTAAATGGTCTAATGGTGATGAAGTTACATTCAGTGCTCTGACTGGAAGCTGTGGGCCAAAGCCCTGCTGTGCTGCTATGAAGActgatgcatcatgggaaagtcCTCCGTGTACAGAGAAAAGAAACTTCATGTGTTATAAACAAGATCAGACTGACCTCACCTTCAGCTATCACCTGATCACTGAGAATAAGACCTGGTATGAAGCTCAGAGTTACTGCAGGAAGATCTACACTGATCTGGTCAGCATCAGAGATCAGGAGCAGAATGAAGCAGTGAAGATAGCAGGGATGAACAGCAGTGATTCCTTCTGGATTGGTCTGCTGCGTGATGACTGGGAGTGGGCTGATGGAGGAAGATCTGCTTACAGAAACTGG
>TU115033
GAAGACTGATAGATCATGGGAAAGTCCTCTGTGTACAGAGAAAAGAAACTTCATGTGTTATAAACAAGATCAGACTGACCTCACCTTCAGCTATCACCTGATCACTGAGAATAAGACCTGGTATGAAGCTCAGAGTTACTGCAGGAAGAACTACACTGATCTGGTCAGCATCAGAGATCAGGAGCAGAATGAAGCAGTGAAGATAGCAGGGATGAAGAGCAGCACACCATTCTGGATTGGTCTGCTGTATGATGACTGGGAGTGGGCTGATGGAGGAAGATCTGCTTACAGAAACTGGG
>TU115036
GAAGACTGATAGATCATGGGAAAGTCCTCTGTGTACAGAGAAAAGAAACTTCATGTGTTATAAACAAGATCAGACTGACCTCACCTTCAGCTATCACCTGATCACTGAGAATAAGACCTGGTATGAAGCTCAGAGTTACTGCAGGAAGAACTACACTGATCTGGTCAGCATCAGAGATCAGGAGCAGAATGAAGCAGTGAAGATAGCAGGGATGAAGAGCAGTGATTCCTTCTGGATTGGTCTGCTGCGTGATGACTGGGAGTGGGCTGATGGAGGAAGATCTGCTTACAGAAACTGG
>TU115044
TGCTGCTCTGTGCTACAACACATCTGTCAGTGATGACCGTATGAGCGGCACTCTGAACTACTGTAGGAAAGTCTTTTCTGCTGCAGAACAAAACAATTCTCTCACAACTTTCCATCTCATAGAGAAGAACCTGACTCAGTCTGAAGCTCGAGCAGCTTGTAGAGAGAACTACACTGATCTGGTCACTGTGTATAATGATGAAAACATCACTGCACTGATCAGACTGACTGGTATCGGCTCTGCATGGACTGGTCTGTACAGGAACCAGTCCAGTGTAAAATGGTCTAATGGTGATGACGTTACATTCAGAAATCAGGAGACTGGAGACTGTGGCTCATTGCCCTGCTGTTCTACTATGAAGGCTGATGGTTCATGGGACAAAATTCAGTGTACACAGACAAAAAACTTCATGTGTTATAAACAAGGT
>XM_022672505.1
ACAGTCTTTTTCTCCTACAGAAAAAAGTCCTCTCAGGACTTTCCATCTCATTGAGAAGAATATGACTCAGTCTGAAGCTCGAGCAGCTTGTAGAGAGAACTACACTGATCTGGTCACTGTGTGCAGTGAAGAagagaacactgcactgattaatCTGATCAACAGTAAGGCCTGGATTGGTCTTCAGCGCAGTGATAACAGTTCTAAATGGTCTAATGGTGATGAAGTTACATTCAGTAATAATGTGACTGTGACTGGAAGCTGTGGGACAAAGCCCTGCTGTGCTGCTATGAAGACTGATAGATCATGGGAAAGTCCTCTGTGTACAGAGAAAAGAAACTTCATGTGTTATAAACAAGATCAGACTGACCTCACCTTCAGCTATCACCTGATCACTGAGAATAAGACCTGGTATGAAGCTCAGAGTTACTGCAGGAAGAACTACACTGATCTGGTCAGCATCAGAGATCAGGAGCAGAATGAAGCAGTGAAGATAGCAGGGATGAAGAGCAGCACACCATTCTGGATTGGTCTGCTGTATGATGACTGGGAGTGGGCTGATGGAGGAAGATCTGCTTACAGAAACTGGGAGGATGGACAACCTCGATCAACATCAGACTGTACACAGCTGAATGTGAATGGGAAATGGCAAACAGTGCCATGCAGTAATCATGTGGCTGCTGCTCTGTGCTACAACATTTCTGGGATACCAGCTTCCCACTTATGCAAGACTCAGTGGGCTCTACCGACGACTAAAACTGAAGCCCTAGAAAGCACCCACACTTCCCCAGTGATCAGCACAAAAGACAAGGATCAAGCCTCCCTAGAAAGGTCCATGCAGGGAAAGGAAAGTCTCAGATACTGTATCTCAGATACAGGCTCAGAAACAGCCAAgagacccatggtcactctggaggagctgcagaaatcaacAGATTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115032 False 849 TUCP 0.45 4 32452714 32460996
TU115033 False 299 TUCP 0.45 2 32489681 32491529
TU115036 False 298 TUCP 0.46 3 32452714 32491529
TU115044 False 427 TUCP 0.44 3 32449631 32489592
XM_022672505.1 True 940 mRNA 0.46 4 32488454 32491820

Neighbor

gene id symbol gene type direction distance location
LOC103036987 LOC103036987 coding downstream 48462 32394659 ~ 32401169 (-)
akirin1 akirin1,LOC107700743,LOC107730931,LOC107704951 coding downstream 58201 32375329 ~ 32391430 (-)
rhbdl2 rhbdl2,LOC108280367,LOC106605138 coding downstream 77144 32356090 ~ 32372487 (-)
LOC103036077 LOC108441231,LOC105890366 coding downstream 104148 32340374 ~ 32345483 (-)
LOC103035758 LOC108441230 coding downstream 110760 32326973 ~ 32338871 (-)
clip4 clip4,LOC107676111 coding upstream 446286 32938106 ~ 33031389 (-)
LOC103041514 lrfn2,LOC107703608,LOC107754970 coding upstream 709982 33201802 ~ 33475689 (-)
supt7l supt7l,LOC107726086,LOC107656753,LOC107553729,LOC107737450,LOC107697525 coding upstream 1328245 33820065 ~ 33829743 (-)
LOC103040637 si:dkey-16j16.4,LOC108423460,LOC107697539,LOC107566112,LOC107553735,LOC107656750,LOC108270219 coding upstream 1365479 33857299 ~ 33910007 (-)
zdhhc14 zdhhc14,LOC106574720,LOC105897223 coding upstream 2307319 34799139 ~ 34867074 (-)
G85401 NA non-coding downstream 8314 32420015 ~ 32441317 (-)
G85408 NA non-coding downstream 17271 32429538 ~ 32432360 (-)
G85392 NA non-coding downstream 31665 32415559 ~ 32417966 (-)
LOC111193247 NA non-coding downstream 159687 32287562 ~ 32289944 (-)
G85334 NA non-coding downstream 229631 32218838 ~ 32220000 (-)
G85421 NA non-coding upstream 1466 32493286 ~ 32493504 (-)
LOC111193146 NA non-coding upstream 8460 32500280 ~ 32505159 (-)
G85439 NA non-coding upstream 56527 32548347 ~ 32548878 (-)
G85476 NA non-coding upstream 435688 32927508 ~ 32927923 (-)
LOC111193248 NA non-coding upstream 437697 32929517 ~ 32938098 (-)
mrpl34 mrpl34 other downstream 1626933 30820119 ~ 30822698 (-)
LOC103036386 camk2n2,LOC107659987,LOC107557885 other downstream 1865810 30579943 ~ 30583821 (-)
map6d1 LOC108428296 other downstream 2093911 30334038 ~ 30355720 (-)
G84663 LOC100707891,LOC103372284 other downstream 2374694 30008627 ~ 30074937 (-)
hpcal1 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378,LOC106607246 other downstream 2519056 29858977 ~ 29930575 (-)
G85501 NA other upstream 619654 33111474 ~ 33111734 (-)
G85550 NA other upstream 1017860 33509680 ~ 33518671 (-)
G85618 slc4a1ap other upstream 1342192 33834012 ~ 33839629 (-)
rbks rbks,LOC107553733,LOC107656748 other upstream 1463375 33955195 ~ 34012562 (-)
daam2 daam2 other upstream 1782571 34274391 ~ 34471605 (-)

Expression


Co-expression Network