RNA id: TU115032


Basic Information

Item Value
RNA id TU115032
length 849
RNA type TUCP
GC content 0.45
exon number 4
gene id LOC111193156
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 32449631 ~ 32491820 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAAGATGATTTTAATACAGTAGGATGTTGCAGGAAATGCGGCCCAGGTCAGTCTAATTTGTTTATCAGCTCCAGCCTACATTTCTCCTAAAGCTGTAACAGCTTCTTCCTCATTCAGCGTCCAGCACTTCATCAGATCTCCTGACTGCAGTCTAGAACAGTTCTAATGTTGTATGTTAAACCCACACGCCACTGATTCTGGTGGAAGTGTTTGGTGAAAATATGGCAACCATCCTGATCTTCCTCCTCCTGGTCCTCTTCCCAGACTTTTCTTCTGCAGAACAAAGTCCTCTCAGAACTTTCCATCTCATTGTGAAGAAGCCAGGGTTCAACAATCAGTCTGTAGCTCGAGCAGCTTGTAGAGAGAACTACACTGATCTGGTCACTGTGTGCAGTGAAGAagagaacactgcactgattaatCTGATCAACAGTAATGTCTGGATTGGTCTTCAGCGCAGTCAGTTCAGTTCTAAATGGTCTAATGGTGATGAAGTTACATTCAGTGCTCTGACTGGAAGCTGTGGGCCAAAGCCCTGCTGTGCTGCTATGAAGActgatgcatcatgggaaagtcCTCCGTGTACAGAGAAAAGAAACTTCATGTGTTATAAACAAGATCAGACTGACCTCACCTTCAGCTATCACCTGATCACTGAGAATAAGACCTGGTATGAAGCTCAGAGTTACTGCAGGAAGATCTACACTGATCTGGTCAGCATCAGAGATCAGGAGCAGAATGAAGCAGTGAAGATAGCAGGGATGAACAGCAGTGATTCCTTCTGGATTGGTCTGCTGCGTGATGACTGGGAGTGGGCTGATGGAGGAAGATCTGCTTACAGAAACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115021 lncRNA downstream 11397 32420015 ~ 32441317 (-) True G85401
TU115028 lncRNA downstream 20354 32429538 ~ 32432360 (-) True G85408
TU115009 lncRNA downstream 34748 32415559 ~ 32417966 (-) True G85392
XR_002650386.1 lncRNA downstream 162770 32287562 ~ 32289944 (-) True LOC111193247
TU114931 lncRNA downstream 232714 32218838 ~ 32220000 (-) True G85334
TU115053 lncRNA upstream 32290 32493286 ~ 32493504 (-) True G85421
XR_002650285.1 lncRNA upstream 39284 32500280 ~ 32505159 (-) True LOC111193146
TU115072 lncRNA upstream 87351 32548347 ~ 32548878 (-) True G85439
TU115109 lncRNA upstream 466512 32927508 ~ 32927923 (-) True G85476
XR_002650387.1 lncRNA upstream 468521 32929517 ~ 32938098 (-) True LOC111193248
XM_007230956.3 mRNA downstream 51545 32394659 ~ 32401169 (-) True LOC103036987
XM_015608427.2 mRNA downstream 61284 32375329 ~ 32391430 (-) False akirin1
XM_007230954.3 mRNA downstream 61284 32375329 ~ 32391430 (-) True akirin1
XM_007230955.3 mRNA downstream 80227 32356090 ~ 32372487 (-) True rhbdl2
XM_007230953.2 mRNA downstream 107231 32340374 ~ 32345483 (-) True LOC103036077
XM_022672505.1 mRNA upstream 27458 32488454 ~ 32491820 (-) True LOC111193156
XM_022673188.1 mRNA upstream 477110 32938106 ~ 33031389 (-) True clip4
XM_022673189.1 mRNA upstream 740806 33201802 ~ 33475689 (-) True LOC103041514
XM_022673191.1 mRNA upstream 1359069 33820065 ~ 33829743 (-) True supt7l
XM_022673192.1 mRNA upstream 1396303 33857299 ~ 33910007 (-) True LOC103040637
trnar-ucg_5 other downstream 599339 31853303 ~ 31853375 (-) True trnar-ucg_5
TU114406 other downstream 1630036 30820606 ~ 30822678 (-) False mrpl34
TU114221 other downstream 1868955 30579989 ~ 30583759 (-) False LOC103036386
trnas-aga_9 other downstream 2371981 30080652 ~ 30080733 (-) True trnas-aga_9
TU114020 other downstream 2377777 30008627 ~ 30074937 (-) True G84663
TU115033 other upstream 28685 32489681 ~ 32491529 (-) False LOC111193156
TU115139 other upstream 650478 33111474 ~ 33111734 (-) True G85501
TU115204 other upstream 1048684 33509680 ~ 33518671 (-) True G85550
TU115290 other upstream 1373016 33834012 ~ 33839629 (-) True G85618
XR_002650288.1 other upstream 1477464 33938460 ~ 33938701 (-) True LOC111193148

Expression Profile