RNA id: TU114931


Basic Information

Item Value
RNA id TU114931
length 1163
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G85334
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 32218838 ~ 32220000 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttttttcttggtttttaataaaaatatcatttgaaaataaatatattttaacgttaaactaaaacaacaaaactggtgttaataattaaaacttttaacgcaacaataaatatattactgtgaaaatataatgaaaaacaaacgAGAAATAGTCACTTGAATACAAAtagaatgtgtgttttattttctcaatGGGAAGAGATCGAGCTCTgtttacttttttctctttcgGTTCACGCCGTCCGGTGCCGAGGTCAGGCGGTCAGCACCGGTCAGCGCAGGTCCAATCGTTCGCTCCTAGCACACTAATTTGGCAGCAGGTCTACggcaccacccccccccccccacagaAACCCCCCTTTCCCCTAACAAAAATAAAGGCCTTTATTCCGGAATGTTTAAGACTTTCTGCTGTGAACAAAACTCAGATTCAGGCAGATTGGTGTAGAAATGatgaacaataacaataacaaacgaaaaaaaaaaacatataaatagatgaaattaaatacagaatactgaaatactctaaatttataAATTAGATGTAGTGTACTAGCTGAAAGGGATATTAGTCATGTATATATACAGACCCACGGTCACGGTGGCAGAGTGAGCAGTTCCTAAACTCGTCTCTTTGGGCAACAAGGGGAATTGAACCGTTATCTCTCCGTATATACCGACGTTTAATATCCCTTTATTATTTACACACTCAGTTCTATTGCGTGTTAGTACAGTCGTCGTGTTTGAGTAAGACTTTGTCCCTCGCTTTCAGAGAGTCCTCACAGGATATCATTccgcttttttttcttcttcgtttttttttttttccgtacACTTCCCAACGAGGACCTGCCGTTTCGTCCGATTGGAACGCAGCCCCAGGCGATCCGTCCTCCGTCGTCTTGCACAGAGTTCGTGTTTGCGGATCGCCGTTGAATATGAATCCACAGCAGCTTAGGTCAGAGAAGTCGTGTGTCCCGTGTGGACGTTCTGTTCTGTGTCCAATCACACGCAGGTCCAAACTGGCACTGGCACTAAAAACACATCCATCTCTCTCGTGTTCAGAAACTGGAGGCACTGTCGTTCACCACGTGTTTGTGTTTCCCATAGCAGCATTACACATTGTCAAAGTCtctcttcatatatatatatatata

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0031090 organelle membrane cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114928 lncRNA downstream 70 32216699 ~ 32218768 (-) True G85333
TU114921 lncRNA downstream 4728 32210116 ~ 32214110 (-) True G85331
TU114898 lncRNA downstream 99789 32118563 ~ 32119049 (-) True G85309
TU114897 lncRNA downstream 125815 32092153 ~ 32093023 (-) True G85308
TU114877 lncRNA downstream 204501 32001852 ~ 32014337 (-) False G85297
XR_002650386.1 lncRNA upstream 67562 32287562 ~ 32289944 (-) True LOC111193247
TU115009 lncRNA upstream 195559 32415559 ~ 32417966 (-) True G85392
TU115021 lncRNA upstream 200015 32420015 ~ 32441317 (-) True G85401
TU115028 lncRNA upstream 209538 32429538 ~ 32432360 (-) True G85408
TU115053 lncRNA upstream 273286 32493286 ~ 32493504 (-) True G85421
XM_022673182.1 mRNA downstream 322623 31884102 ~ 31896215 (-) True gprc6a
XM_022673179.1 mRNA downstream 383379 31823577 ~ 31835459 (-) False zufsp
XM_007230952.3 mRNA upstream 106973 32326973 ~ 32338871 (-) False LOC103035758
XM_022673185.1 mRNA upstream 106973 32326973 ~ 32336688 (-) True LOC103035758
XM_007230953.2 mRNA upstream 120374 32340374 ~ 32345483 (-) True LOC103036077
XM_007230955.3 mRNA upstream 136090 32356090 ~ 32372487 (-) True rhbdl2
XM_015608427.2 mRNA upstream 155329 32375329 ~ 32391430 (-) False akirin1
trnar-ucg_5 other downstream 365463 31853303 ~ 31853375 (-) True trnar-ucg_5
TU114406 other downstream 1396160 30820606 ~ 30822678 (-) False mrpl34
TU114221 other downstream 1635079 30579989 ~ 30583759 (-) False LOC103036386
trnas-aga_9 other downstream 2138105 30080652 ~ 30080733 (-) True trnas-aga_9
TU114020 other downstream 2143901 30008627 ~ 30074937 (-) True G84663
TU115044 other upstream 229631 32449631 ~ 32489592 (-) False LOC111193156
TU115032 other upstream 232714 32452714 ~ 32460996 (-) False LOC111193156
TU115036 other upstream 232714 32452714 ~ 32491529 (-) False LOC111193156
TU115033 other upstream 269681 32489681 ~ 32491529 (-) False LOC111193156
TU115139 other upstream 891474 33111474 ~ 33111734 (-) True G85501

Expression Profile