Gene
RNA
| Item | Value |
|---|---|
| gene id | G85334 |
| gene name | NA |
| gene type | non-coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035905.1 |
| NCBI id | CM008308.1 |
| chromosome length | 42966623 |
| location | 32218838 ~ 32220000 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| id | name | namespace |
|---|---|---|
| GO:1902600 | proton transmembrane transport | biological_process |
| GO:0005743 | mitochondrial inner membrane | cellular_component |
| GO:0005746 | mitochondrial respirasome | cellular_component |
| GO:0044429 | obsolete mitochondrial part | cellular_component |
| GO:0044455 | obsolete mitochondrial membrane part | cellular_component |
| GO:0019866 | organelle inner membrane | cellular_component |
| GO:0031090 | organelle membrane | cellular_component |
| GO:0031966 | mitochondrial membrane | cellular_component |
| GO:0031967 | organelle envelope | cellular_component |
| GO:0031975 | envelope | cellular_component |
| GO:0070469 | respirasome | cellular_component |
| GO:0005740 | mitochondrial envelope | cellular_component |
| GO:0008137 | NADH dehydrogenase (ubiquinone) activity | molecular_function |
| GO:0009055 | electron transfer activity | molecular_function |
| GO:0003954 | NADH dehydrogenase activity | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0050136 | NADH dehydrogenase (quinone) activity | molecular_function |
| GO:0015002 | heme-copper terminal oxidase activity | molecular_function |
| GO:0015078 | proton transmembrane transporter activity | molecular_function |
| GO:0016651 | oxidoreductase activity, acting on NAD(P)H | molecular_function |
| GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | molecular_function |
| GO:0004129 | cytochrome-c oxidase activity | molecular_function |
| GO:0016675 | oxidoreductase activity, acting on a heme group of donors | molecular_function |
| GO:0016676 | oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU114931 | True | 1163 | lncRNA | 0.40 | 1 | 32218838 | 32220000 |
| TU114932 | False | 1094 | lncRNA | 0.42 | 1 | 32218838 | 32219931 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| gprc6a | NA | coding | downstream | 322623 | 31884102 ~ 31896215 (-) |
| trnar-ucg_5 | NA | coding | downstream | 365463 | 31853303 ~ 31853375 (-) |
| zufsp | NA | coding | downstream | 383379 | 31823577 ~ 31835459 (-) |
| klhl32 | klhl32 | coding | downstream | 430706 | 31764867 ~ 31788132 (-) |
| LOC111193154 | NA | coding | downstream | 518734 | 31653142 ~ 31700104 (-) |
| LOC103035758 | LOC108441230 | coding | upstream | 106973 | 32326973 ~ 32338871 (-) |
| LOC103036077 | LOC108441231,LOC105890366 | coding | upstream | 120374 | 32340374 ~ 32345483 (-) |
| rhbdl2 | rhbdl2,LOC108280367,LOC106605138 | coding | upstream | 136090 | 32356090 ~ 32372487 (-) |
| akirin1 | akirin1,LOC107700743,LOC107730931,LOC107704951 | coding | upstream | 155329 | 32375329 ~ 32391430 (-) |
| LOC103036987 | LOC103036987 | coding | upstream | 174659 | 32394659 ~ 32401169 (-) |
| G85333 | NA | non-coding | downstream | 70 | 32216699 ~ 32218768 (-) |
| G85331 | NA | non-coding | downstream | 4728 | 32210116 ~ 32214110 (-) |
| G85309 | NA | non-coding | downstream | 99789 | 32118563 ~ 32119049 (-) |
| G85308 | NA | non-coding | downstream | 125815 | 32092153 ~ 32093023 (-) |
| G85297 | NA | non-coding | downstream | 204501 | 32001852 ~ 32014337 (-) |
| LOC111193247 | NA | non-coding | upstream | 67562 | 32287562 ~ 32289944 (-) |
| G85392 | NA | non-coding | upstream | 195559 | 32415559 ~ 32417966 (-) |
| G85401 | NA | non-coding | upstream | 200015 | 32420015 ~ 32441317 (-) |
| G85408 | NA | non-coding | upstream | 209538 | 32429538 ~ 32432360 (-) |
| G85421 | NA | non-coding | upstream | 273286 | 32493286 ~ 32493504 (-) |
| mrpl34 | mrpl34 | other | downstream | 1396140 | 30820119 ~ 30822698 (-) |
| LOC103036386 | camk2n2,LOC107659987,LOC107557885 | other | downstream | 1635017 | 30579943 ~ 30583821 (-) |
| map6d1 | LOC108428296 | other | downstream | 1863118 | 30334038 ~ 30355720 (-) |
| G84663 | LOC100707891,LOC103372284 | other | downstream | 2143901 | 30008627 ~ 30074937 (-) |
| hpcal1 | hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378,LOC106607246 | other | downstream | 2288263 | 29858977 ~ 29930575 (-) |
| LOC111193156 | NA | other | upstream | 229631 | 32449631 ~ 32491820 (-) |
| G85501 | NA | other | upstream | 891474 | 33111474 ~ 33111734 (-) |
| G85550 | NA | other | upstream | 1289680 | 33509680 ~ 33518671 (-) |
| G85618 | slc4a1ap | other | upstream | 1614012 | 33834012 ~ 33839629 (-) |
| rbks | rbks,LOC107553733,LOC107656748 | other | upstream | 1735195 | 33955195 ~ 34012562 (-) |
