G85542


Basic Information

Item Value
gene id G85542
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 33492460 ~ 33493021 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115196
TTGTGTTTCTACAGGAGACACATGTATCTAAAACATCTGCGCAAACATTCTCCTTTCCACAGTTTCCTCACACATACTCAGCCTGTTATAACTCCAAACAAAGAGGTTTAGCTATATTGATTAACAAAAAGTTAAACTTCACCATCAGAAATACTATATCAGACCCAGAAGGCAGATTTATAATACTTAATTTATCTattcaaaatattaatttttgcaTTGCTAGTATATATGCGCCAAATGTTGATGACCCCTCCTTCTTTCATACCTTTTTCACTTTACTTTCTGATCACTCTGACACCACACTGGTGATAGGAGGAGACTTCAACTTGGTACTTAATGAAGAGATTGACAGGCTCAGTACAGCAGTGAGTCAAAGGAACTGGCAGTCTGCAGACATTCTTAAACAGTACATGAAGGATTTTGGTCTATGCGATGCTTGGCGTTCACATCACCCCACTCTGAGAGAGTATAGTTTTTTCTCACACGTACATAAATCTCACTCTCGCTTAGATTACTTTTTAGTTAGCCGCTCTATGATGAGGGAAATCACAGACACTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115196 True 562 lncRNA 0.38 1 33492460 33493021

Neighbor

gene id symbol gene type direction distance location
LOC103041514 lrfn2,LOC107703608,LOC107754970 coding downstream 16771 33201802 ~ 33475689 (-)
clip4 clip4,LOC107676111 coding downstream 461071 32938106 ~ 33031389 (-)
LOC111193155 NA coding downstream 1008627 32442573 ~ 32483833 (-)
LOC103036987 LOC103036987 coding downstream 1091291 32394659 ~ 32401169 (-)
akirin1 akirin1,LOC107700743,LOC107730931,LOC107704951 coding downstream 1101030 32375329 ~ 32391430 (-)
supt7l supt7l,LOC107726086,LOC107656753,LOC107553729,LOC107737450,LOC107697525 coding upstream 327044 33820065 ~ 33829743 (-)
LOC103040637 si:dkey-16j16.4,LOC108423460,LOC107697539,LOC107566112,LOC107553735,LOC107656750,LOC108270219 coding upstream 364278 33857299 ~ 33910007 (-)
zdhhc14 zdhhc14,LOC106574720,LOC105897223 coding upstream 1306118 34799139 ~ 34867074 (-)
LOC103041141 LOC108423399 coding upstream 1377124 34870145 ~ 35195330 (-)
cldn20 cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC108443299,LOC107728965 coding upstream 1828448 35321469 ~ 35337462 (-)
G85528 NA non-coding downstream 182367 33247051 ~ 33310093 (-)
G85504 NA non-coding downstream 337713 33154502 ~ 33154747 (-)
G85503 NA non-coding downstream 378821 33113239 ~ 33113639 (-)
LOC111193248 NA non-coding downstream 554362 32929517 ~ 32938098 (-)
G85476 NA non-coding downstream 564537 32927508 ~ 32927923 (-)
G85561 NA non-coding upstream 143218 33636239 ~ 33636573 (-)
LOC111193147 NA non-coding upstream 272902 33765923 ~ 33803521 (-)
G85617 NA non-coding upstream 355539 33848560 ~ 33849769 (-)
LOC111193148 NA non-coding upstream 445439 33938460 ~ 33938701 (-)
G85654 NA non-coding upstream 713208 34206229 ~ 34206807 (-)
G85501 NA other downstream 380726 33111474 ~ 33111734 (-)
LOC111193156 NA other downstream 1000640 32449631 ~ 32491820 (-)
mrpl34 mrpl34 other downstream 2669762 30820119 ~ 30822698 (-)
LOC103036386 camk2n2,LOC107659987,LOC107557885 other downstream 2908639 30579943 ~ 30583821 (-)
map6d1 LOC108428296 other downstream 3136740 30334038 ~ 30355720 (-)
G85550 NA other upstream 16659 33509680 ~ 33518671 (-)
G85618 slc4a1ap other upstream 340991 33834012 ~ 33839629 (-)
rbks rbks,LOC107553733,LOC107656748 other upstream 462174 33955195 ~ 34012562 (-)
daam2 daam2 other upstream 781370 34274391 ~ 34471605 (-)
G85902 tfb1m other upstream 1795211 35288232 ~ 35295034 (-)

Expression


Co-expression Network