G85884


Basic Information

Item Value
gene id G85884
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35201480 ~ 35300903 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115633
aagagaacactgaacaatgagaaatggctgaaataacaaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagtttaaagagttcagaaatcaatatttggtggaataaccctgtttttaatcacagtttttatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgcctttactcctggtgcaaaaattcaagcagttcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115633 True 257 lncRNA 0.35 2 35201480 35300903

Neighbor

gene id symbol gene type direction distance location
LOC103041141 LOC108423399 coding downstream 6150 34870145 ~ 35195330 (-)
zdhhc14 zdhhc14,LOC106574720,LOC105897223 coding downstream 334406 34799139 ~ 34867074 (-)
LOC103040637 si:dkey-16j16.4,LOC108423460,LOC107697539,LOC107566112,LOC107553735,LOC107656750,LOC108270219 coding downstream 1291473 33857299 ~ 33910007 (-)
supt7l supt7l,LOC107726086,LOC107656753,LOC107553729,LOC107737450,LOC107697525 coding downstream 1371737 33820065 ~ 33829743 (-)
LOC103041514 lrfn2,LOC107703608,LOC107754970 coding downstream 1725791 33201802 ~ 33475689 (-)
cldn20 cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC108443299,LOC107728965 coding upstream 20566 35321469 ~ 35337462 (-)
tiam2 tiam2 coding upstream 47281 35348184 ~ 35510745 (-)
scaf8 scaf8,LOC107749595,LOC107675315 coding upstream 256305 35557208 ~ 35600287 (-)
LOC103042065 LOC108437746 coding upstream 306183 35607086 ~ 35632755 (-)
LOC103031708 LOC103031708 coding upstream 393646 35694549 ~ 35718212 (-)
G85777 NA non-coding downstream 433796 34766827 ~ 34767684 (-)
G85781 kcnk5 non-coding downstream 465905 34732539 ~ 34735575 (-)
G85782 kcnk5,LOC107571180 non-coding downstream 472336 34726545 ~ 34729144 (-)
G85776 NA non-coding downstream 504962 34696285 ~ 34696518 (-)
G85722 NA non-coding downstream 565374 34624577 ~ 34636106 (-)
G85906 NA non-coding upstream 30178 35331081 ~ 35331679 (-)
G85915 NA non-coding upstream 74146 35375049 ~ 35380580 (-)
G85922 NA non-coding upstream 243049 35543952 ~ 35544426 (-)
G85926 NA non-coding upstream 253957 35554860 ~ 35555189 (-)
G85927 NA non-coding upstream 276033 35576936 ~ 35579100 (-)
daam2 daam2 other downstream 729875 34274391 ~ 34471605 (-)
rbks rbks,LOC107553733,LOC107656748 other downstream 1188918 33955195 ~ 34012562 (-)
G85618 slc4a1ap other downstream 1361851 33834012 ~ 33839629 (-)
G85550 NA other downstream 1682809 33509680 ~ 33518671 (-)
G85501 NA other downstream 2089746 33111474 ~ 33111734 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other upstream 1288001 36588904 ~ 37101581 (-)
G86432 NA other upstream 2681971 37982874 ~ 38069052 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other upstream 4507227 39808130 ~ 39858569 (-)
LOC111193261 NA other upstream 5232465 40533368 ~ 40536334 (-)
LOC103044865 NA other upstream 5461769 40762672 ~ 40770501 (-)

Expression


Co-expression Network