G85927


Basic Information

Item Value
gene id G85927
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35576936 ~ 35579100 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115691
CTGCAAACCTTTTTATGGACTGCAAAAGCATATATAAACAGTAGAGGAGAtacagaggggaaaaaaatatttacagcagTGGCTTTTACATTTTAGGAGCCAGTTAATTAAAGGccatgttgtaaaaaaaacacaacaacaataacaaatgGGTAAATGCCATCAAATGGTTGCACAGTGCTAAACCTAAGTCTAGTTGGAAGCAGTGAACACTAGTTTAAAGAAAACCAGTGCTAAAGTTGGTTTAGTTAAAAGGAGTAAATGCTAGTTTAAAGAAAACCAGTGCTAAATTTGGGTTTAATTAGAAGGAGTAAATGCTAGTTTAAAGAAAACCAGTGCTAAAGTTGGGTTTAGTTAAAAGGAGTAAATGCTAGTTTAAAGAAAACCAGTGCTAAAGTTGGGTTTAGTTAAAAGGAGTAAATGCTAGTTTAAAGAAAACCAGTGCTAAAGTTGGGTTTAGTTAAAAGGAGTAAATGCTAGTTTAAAGAAAACCAGTGCTAAAGTTGGGTCTAGTTAGAAGGAGTAAATGCTAGTTTAAAGAAAACCAGTGCTAAAGTTGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115691 True 562 lncRNA 0.34 2 35576936 35579100

Neighbor

gene id symbol gene type direction distance location
tiam2 tiam2 coding downstream 66191 35348184 ~ 35510745 (-)
cldn20 cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC108443299,LOC107728965 coding downstream 239474 35321469 ~ 35337462 (-)
LOC103041141 LOC108423399 coding downstream 381606 34870145 ~ 35195330 (-)
zdhhc14 zdhhc14,LOC106574720,LOC105897223 coding downstream 709862 34799139 ~ 34867074 (-)
LOC103040637 si:dkey-16j16.4,LOC108423460,LOC107697539,LOC107566112,LOC107553735,LOC107656750,LOC108270219 coding downstream 1666929 33857299 ~ 33910007 (-)
LOC103042065 LOC108437746 coding upstream 27986 35607086 ~ 35632755 (-)
LOC103031708 LOC103031708 coding upstream 115449 35694549 ~ 35718212 (-)
LOC103039887 LOC108437743 coding upstream 311977 35891077 ~ 35911845 (-)
kcnk13 kcnk13,LOC107680770,LOC107588297,LOC107751801,LOC107755770,LOC107693081 coding upstream 342381 35921481 ~ 35934896 (-)
tdp1 tdp1 coding upstream 390537 35969637 ~ 36045110 (-)
G85926 NA non-coding downstream 21747 35554860 ~ 35555189 (-)
G85922 NA non-coding downstream 32510 35543952 ~ 35544426 (-)
G85915 NA non-coding downstream 196356 35375049 ~ 35380580 (-)
G85906 NA non-coding downstream 245257 35331081 ~ 35331679 (-)
G85884 NA non-coding downstream 276033 35201480 ~ 35300903 (-)
G85955 NA non-coding upstream 25278 35604378 ~ 35605763 (-)
G85970 LOC108437745 non-coding upstream 88663 35667763 ~ 35672891 (-)
G85980 NA non-coding upstream 147049 35726149 ~ 35726664 (-)
G86015 NA non-coding upstream 170464 35749564 ~ 35749814 (-)
G86016 NA non-coding upstream 170764 35749864 ~ 35750233 (-)
G85902 tfb1m other downstream 281902 35288232 ~ 35295034 (-)
daam2 daam2 other downstream 1105331 34274391 ~ 34471605 (-)
rbks rbks,LOC107553733,LOC107656748 other downstream 1564374 33955195 ~ 34012562 (-)
G85618 slc4a1ap other downstream 1737307 33834012 ~ 33839629 (-)
G85550 NA other downstream 2058265 33509680 ~ 33518671 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other upstream 1009804 36588904 ~ 37101581 (-)
G86432 NA other upstream 2403774 37982874 ~ 38069052 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other upstream 4229030 39808130 ~ 39858569 (-)
LOC111193261 NA other upstream 4954268 40533368 ~ 40536334 (-)
LOC103044865 NA other upstream 5183572 40762672 ~ 40770501 (-)

Expression


Co-expression Network