LOC111193270


Basic Information

Item Value
gene id LOC111193270
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 41725320 ~ 41751984 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU117780
TGAACCTGTTCCTAAAatCTGGTGATCCTGtactacagtactgtgtgtatatatgtatatatgtggtGTAAGATGTGCTCACCAGTTCCTTCGCCTCCTGGAGAGAATCCTCCACGTCTGAGAAGCTGAAACTGGCCACAGTGATGAACTGACTGACCACTGATACAAACTTATCACCAGAATCAACAGGACGACTCTTCTGATACTCCAGctcctgcacacacaccaaataaattaataaatactt
>TU117787
GTTTTGGATTGGTGTTTCATTCGGAggatgtttcattttattttagaggtTTCCTCATGGTGTCTGGTGATTTTCACACTTTAGTCCAGTAGGTGGTGGTAGTGCAGCTTCAGTTGGTCTGCTGCTCACCTTTACCTGACAGGGGAAGAAGATCCAGTACAGTGATTAGAGCAGAGTGAAAAGTGTTACACTAACTGGAAGATAAAAGCTATTTTCGGATTTATCAGTCCACTAACACACCGAGGACCGGAATTCACCCTGTTGGTGAACCAAACATGCTGGTTTCGCACTGTGTGCGGTCATAC
>XR_002650403.1
TTAATTGGACTGGGCTGGGTTTATTTAGTATGGTTTTGGATTGGTGTTTCATTCGGAggatgtttcattttattttagaggtTTCCTCATGGTGTCTGGTGATTTTCACACTTTAGTCCAGTAGGTGGTGGTAGTGCAGCTTCAGTTGGTCTGCTGCTCACCTTTACCTGACAGGGGAAGAAGATCCAGTACAGTGATTAGAGCAGAGTGAAAAGTGTTACACTAACTGGAAGATAAAAGCTATTTTCGGATTTATCAGTCCACTAACACACCGAGGACCGGAATTCACCCTGTTGGTGAACCAAACATGCTGGTTTCGCACTGTGTGCGGTCATACCCACTGGGGGAGCCTGACGACGACAGCCGGCCGGTTCCCTGGCCCACAGCCTGAGCAAGTCTGAACCTGTTCCTAAAGTACGatCTGGTGATCCTGtactacagtactgtgtgtatatatgtatatatgtggtGTAAGATGTGCTCACCAGTTCCTTCGCCTCCTGGAGAGAATCCTCCACGTCTGAGAAGCTGAAACTGGCCACAGTGATGAACTGACTGACCACTGATACAAACTTATCACCAGAATCAACAGGACGACTCTTCTGATACTCCAGctcctgcacacacaccaaataaattaataaatacttaaatatataattaataaaacta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117780 False 247 lncRNA 0.43 2 41725342 41745273
TU117787 False 305 lncRNA 0.44 2 41745335 41751952
XR_002650403.1 True 672 lncRNA 0.44 3 41725320 41751984

Neighbor

gene id symbol gene type direction distance location
LOC103044494 LOC107679991,LOC103143335,LOC107583669,LOC107564980,LOC103461506 coding downstream 254399 41462336 ~ 41470921 (-)
rtraf cunh14orf166,zgc:56576,LOC107693089,LOC107583671,LOC107751811,LOC107680004,LOC107725214 coding downstream 365858 41348855 ~ 41359462 (-)
LOC103035710 NA coding downstream 472892 41233845 ~ 41252428 (-)
gpr137c gpr137c coding downstream 574048 41107720 ~ 41151272 (-)
wdhd1 wdhd1,LOC107583614 coding downstream 641712 41026870 ~ 41083608 (-)
gpr135 gpr135,LOC107679990,LOC107568507,LOC107564991,LOC107693091 coding upstream 4748 41756732 ~ 41759087 (-)
LOC103028306 lrfn5,LOC108443922,LOC107682216,LOC107572671 coding upstream 757138 42509122 ~ 42655749 (-)
G87414 NA non-coding downstream 24445 41621883 ~ 41700875 (-)
G87423 NA non-coding downstream 46401 41676633 ~ 41678919 (-)
G87410 NA non-coding downstream 115564 41605829 ~ 41609756 (-)
G87391 NA non-coding downstream 177665 41546723 ~ 41547655 (-)
G87382 ptp4a2a,LOC107680006,LOC107564961,LOC108413228,LOC108269715 non-coding downstream 236123 41481787 ~ 41489197 (-)
G87442 NA non-coding upstream 941 41752925 ~ 41839323 (-)
G87453 NA non-coding upstream 92274 41844258 ~ 41844802 (-)
G87461 NA non-coding upstream 98397 41850381 ~ 41901926 (-)
G87469 NA non-coding upstream 179783 41931767 ~ 41967600 (-)
G87479 NA non-coding upstream 309242 42061226 ~ 42061455 (-)
LOC103044865 NA other downstream 954819 40762672 ~ 40770501 (-)
LOC111193261 NA other downstream 1188986 40533368 ~ 40536334 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other downstream 1866751 39808130 ~ 39858569 (-)
G86432 NA other downstream 3656268 37982874 ~ 38069052 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other downstream 4623739 36588904 ~ 37101581 (-)
LOC103040189 NA other upstream 21083 41773067 ~ 41804888 (-)

Expression


Co-expression Network