Fish Transcriptome and Expression Database

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ornamental fish

G87613

Basic Information

Item	Value
gene id	G87613
gene name	NA
gene type	non-coding
species	mexican tetra (Astyanax mexicanus)
category of species	ornamental fish

Chromosome Information

Item	Value
chromosome id	NC_035905.1
NCBI id	CM008308.1
chromosome length	42966623
location	42814089 ~ 42814309 (-)
genome version	Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU117979
TACTCAAAGGTGAATAAACAGGAACTGGAGCTTCAGTGAGCAGAGTATCATAAAAGAAAACAGAGTGAAGATAGAACTGTAACAGTGGGATAAAAGTGTTCATCTGTTTATCTGCTGTAGCATCTGCAatagcatcactactgcactgttagcattgctataATGCCAGTAGTATCACTAATGAACCagtagcatcactactgcattGTTGGCATTGCTAT

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU117979	True	221	lncRNA	0.39	1	42814089	42814309

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
LOC103028306	lrfn5,LOC108443922,LOC107682216,LOC107572671	coding	downstream	158340	42509122 ~ 42655749 (-)
gpr135	gpr135,LOC107679990,LOC107568507,LOC107564991,LOC107693091	coding	downstream	1055002	41756732 ~ 41759087 (-)
LOC103044494	LOC107679991,LOC103143335,LOC107583669,LOC107564980,LOC103461506	coding	downstream	1343168	41462336 ~ 41470921 (-)
rtraf	cunh14orf166,zgc:56576,LOC107693089,LOC107583671,LOC107751811,LOC107680004,LOC107725214	coding	downstream	1454627	41348855 ~ 41359462 (-)
LOC103035710	NA	coding	downstream	1561661	41233845 ~ 41252428 (-)
G87611	NA	non-coding	downstream	9836	42798611 ~ 42804253 (-)
G87603	NA	non-coding	downstream	71674	42742212 ~ 42742415 (-)
G87579	NA	non-coding	downstream	292855	42511656 ~ 42521234 (-)
G87557	NA	non-coding	downstream	332348	42481516 ~ 42481741 (-)
G87551	NA	non-coding	downstream	363896	42441130 ~ 42450193 (-)
G87624	NA	non-coding	upstream	11641	42825950 ~ 42888895 (-)
G87634	NA	non-coding	upstream	121197	42935506 ~ 42935821 (-)
LOC103040189	NA	other	downstream	1009201	41773067 ~ 41804888 (-)
LOC103044865	NA	other	downstream	2043588	40762672 ~ 40770501 (-)
LOC111193261	NA	other	downstream	2277755	40533368 ~ 40536334 (-)
dicer1	dicer1,LOC107552827,LOC107671118,LOC107668604	other	downstream	2955520	39808130 ~ 39858569 (-)
G86432	NA	other	downstream	4745037	37982874 ~ 38069052 (-)

Expression

Co-expression Network