G87557


Basic Information

Item Value
gene id G87557
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 42481516 ~ 42481741 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU117920
gggtgctacttttttgctgtgtttatcaaaagaaaaaaacacactgttctcatttaccattatgtatctactagagacagattatatctgtccagtatcatttattttactttaatcctgcatatatggagatatgtagagcgcattattagtaccatgacattctggatcattgacttctgttacaaatctgatacatttcttgtatttttttaatatctcagta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117920 True 226 lncRNA 0.31 1 42481516 42481741

Neighbor

gene id symbol gene type direction distance location
gpr135 gpr135,LOC107679990,LOC107568507,LOC107564991,LOC107693091 coding downstream 722429 41756732 ~ 41759087 (-)
LOC103044494 LOC107679991,LOC103143335,LOC107583669,LOC107564980,LOC103461506 coding downstream 1010595 41462336 ~ 41470921 (-)
rtraf cunh14orf166,zgc:56576,LOC107693089,LOC107583671,LOC107751811,LOC107680004,LOC107725214 coding downstream 1122054 41348855 ~ 41359462 (-)
LOC103035710 NA coding downstream 1229088 41233845 ~ 41252428 (-)
gpr137c gpr137c coding downstream 1330244 41107720 ~ 41151272 (-)
LOC103028306 lrfn5,LOC108443922,LOC107682216,LOC107572671 coding upstream 27381 42509122 ~ 42655749 (-)
G87551 NA non-coding downstream 31323 42441130 ~ 42450193 (-)
G87516 NA non-coding downstream 290485 42169552 ~ 42191031 (-)
G87481 NA non-coding downstream 399771 42081467 ~ 42081745 (-)
G87479 NA non-coding downstream 420061 42061226 ~ 42061455 (-)
G87469 NA non-coding downstream 513916 41931767 ~ 41967600 (-)
G87579 NA non-coding upstream 29915 42511656 ~ 42521234 (-)
G87603 NA non-coding upstream 260471 42742212 ~ 42742415 (-)
G87611 NA non-coding upstream 316870 42798611 ~ 42804253 (-)
G87613 NA non-coding upstream 332348 42814089 ~ 42814309 (-)
G87624 NA non-coding upstream 344209 42825950 ~ 42888895 (-)
LOC103040189 NA other downstream 676628 41773067 ~ 41804888 (-)
LOC103044865 NA other downstream 1711015 40762672 ~ 40770501 (-)
LOC111193261 NA other downstream 1945182 40533368 ~ 40536334 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other downstream 2622947 39808130 ~ 39858569 (-)
G86432 NA other downstream 4412464 37982874 ~ 38069052 (-)

Expression


Co-expression Network