RNA id: TU117920


Basic Information

Item Value
RNA id TU117920
length 226
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G87557
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 42481516 ~ 42481741 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gggtgctacttttttgctgtgtttatcaaaagaaaaaaacacactgttctcatttaccattatgtatctactagagacagattatatctgtccagtatcatttattttactttaatcctgcatatatggagatatgtagagcgcattattagtaccatgacattctggatcattgacttctgttacaaatctgatacatttcttgtatttttttaatatctcagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117914 lncRNA downstream 31323 42441130 ~ 42450193 (-) True G87551
TU117878 lncRNA downstream 290485 42169552 ~ 42191031 (-) True G87516
TU117841 lncRNA downstream 399771 42081467 ~ 42081745 (-) True G87481
TU117839 lncRNA downstream 420061 42061226 ~ 42061455 (-) True G87479
TU117828 lncRNA downstream 513916 41931767 ~ 41967600 (-) True G87469
TU117944 lncRNA upstream 29915 42511656 ~ 42521234 (-) True G87579
TU117969 lncRNA upstream 260471 42742212 ~ 42742415 (-) True G87603
TU117977 lncRNA upstream 316870 42798611 ~ 42804253 (-) True G87611
TU117979 lncRNA upstream 332348 42814089 ~ 42814309 (-) True G87613
TU117991 lncRNA upstream 344209 42825950 ~ 42888895 (-) True G87624
XM_022672519.1 mRNA downstream 676646 41773067 ~ 41804870 (-) True LOC103040189
XM_007239464.3 mRNA downstream 722429 41756732 ~ 41759087 (-) True gpr135
XM_022673317.1 mRNA downstream 1010595 41462336 ~ 41470921 (-) True LOC103044494
XM_022673323.1 mRNA upstream 27381 42509122 ~ 42655749 (-) True LOC103028306
XM_022673322.1 mRNA upstream 32529 42514270 ~ 42655749 (-) False LOC103028306
TU117804 other downstream 676628 41795535 ~ 41804888 (-) False LOC103040189
TU117264 other downstream 1711045 40764092 ~ 40770471 (-) False LOC103044865
TU117171 other downstream 1945182 40533368 ~ 40536334 (-) True LOC111193261
TU116404 other downstream 4412464 37982874 ~ 38069052 (-) True G86432
XR_002650394.1 other downstream 5393585 36591633 ~ 37087931 (-) False nrxn3

Expression Profile