RNA id: TU117914


Basic Information

Item Value
RNA id TU117914
length 1054
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G87551
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 42441130 ~ 42450193 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTACTGCAGTtgccatcattttttcattcaacCCACAACCTTCTTTCGGCACAACTACCCTCACCTGTAAGTAAGGTGTgacagtactgtatgtaaaaagtaaatactACACACACTTAATATAGTGATGTTTAGTCTGGTAATACTTatgcatgtatgttttaatgATGATGCTCTTTTGTAACTTTAATCATAATGATTATTTGTTTTTCCCCTTTAGATGCGCTGCTGATCTGTTCGGGTCGGGTGTTTATAATCACACTGGTCTTCTTTGCTtaatttttggtgtttttgctAACTCTACAGACATCAGCAAGAGTCGCCACGTGAGAGCCATGCAGAATAACGTTATATTTAATTATGTGTTATGTAGTTGTGTCAAAATATCTGAGAGTGGAGGTATATAATAGGTGGGTGGAGTTTGCTACAATcacaaattagtttttttaaggtATAAAAAGCTTGAACACAAAAGAGACTACTGTAACATACAGAATACCCGCTTACTGAATTAGTAGAGACGCAGATATATCATTCTAAATTACACGacacatttatttgtaattacaACATAATGGAGAGAAATTAACATGTACTGGTGGTGCACATTCCCGCTCCAGTCTCTTcttcacaCATCATGGTGACGATCGCTGACTGTGGTCCAGAAGATGAAGGAAAGAGTGAATCACAGCACGTCCAGGTTTCAATCAAACCTGAAGACGATCACTGTACTGAAGATCCACCCTCTCATCCACACTTTCTACAAACACCACgttcaccatcatcatcatcatcatcaccatcagcaGAATCATCCAACACCTCACATTAATCCAGCTTTAATCGTTAATAAACTCAAAAAAAGCgctttaaactgttttaactcGAGCagaacattaatattattaacccGCGGCGCTAAATATCGAGTTTAATCCgtttataaaagtataaaatctGTAGTTTATTAAATTTTCCTAACAGCAGATCCGAACTGGACTCGGCGTCGGCGTGCTCATCCGGGTACTTCCCCAATTACCCAACTACCCAATC

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117878 lncRNA downstream 250099 42169552 ~ 42191031 (-) True G87516
TU117841 lncRNA downstream 359385 42081467 ~ 42081745 (-) True G87481
TU117839 lncRNA downstream 379675 42061226 ~ 42061455 (-) True G87479
TU117828 lncRNA downstream 473530 41931767 ~ 41967600 (-) True G87469
TU117819 lncRNA downstream 539204 41850381 ~ 41901926 (-) True G87461
TU117920 lncRNA upstream 31323 42481516 ~ 42481741 (-) True G87557
TU117944 lncRNA upstream 61463 42511656 ~ 42521234 (-) True G87579
TU117969 lncRNA upstream 292019 42742212 ~ 42742415 (-) True G87603
TU117977 lncRNA upstream 348418 42798611 ~ 42804253 (-) True G87611
TU117979 lncRNA upstream 363896 42814089 ~ 42814309 (-) True G87613
XM_022672519.1 mRNA downstream 636260 41773067 ~ 41804870 (-) True LOC103040189
XM_007239464.3 mRNA downstream 682043 41756732 ~ 41759087 (-) True gpr135
XM_022673317.1 mRNA downstream 970209 41462336 ~ 41470921 (-) True LOC103044494
XM_022673323.1 mRNA upstream 58929 42509122 ~ 42655749 (-) True LOC103028306
XM_022673322.1 mRNA upstream 64077 42514270 ~ 42655749 (-) False LOC103028306
TU117804 other downstream 636242 41795535 ~ 41804888 (-) False LOC103040189
TU117264 other downstream 1670659 40764092 ~ 40770471 (-) False LOC103044865
TU117171 other downstream 1904796 40533368 ~ 40536334 (-) True LOC111193261
TU116404 other downstream 4372078 37982874 ~ 38069052 (-) True G86432
XR_002650394.1 other downstream 5353199 36591633 ~ 37087931 (-) False nrxn3

Expression Profile