RNA id: XM_022673317.1


Basic Information

Item Value
RNA id XM_022673317.1
length 2036
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC103044494
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 41462336 ~ 41470921 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATTCATCCTCCCACTCTCTGAAGGCCGTCtcgctctgactctggctgTAACCCACCTGCGGCTGCGTGTCTGTATGTTAAGGCGTGGCTCCTGGGGGACAGTGGAGCTGAGAGCAGGTCGGACGGGATTCTCCGAGGCTCGCTGTACAACATGGGACGAGTTTATGATCCATTACTGTGAGAAAGCTGAACTAATCGAGGATGAACTGGGGGAATCTAGAGAGCCTCCTGAGTGGGGTCAACAAGTACTCCACCGTGTTTGGACGCGTCTGGCTGTCCATGGTGTTCATCTTCCGGGTGCTGGTGTTCGTGGTGGCGGCGCAGCGCGTTTGGGGCGACGAGAACAAAGACTTTGTGTGCAACACCAGACAACCCGGCTGCACCAATGTCTGCTACGACAGCATCTTCCCCATCTCCCACATCCGCCTGTGGGCCCTGCAGCTCATCTTCGCCACCTGCCCGTCGCTGCTGGTGGTGGCCCACGTCAAGTACCGTGAGGAGAAGGACAAGAAGTACTCAGACTCTCACAAAGGCAATCACCTGTATGCTAATCCGGGGAAAAAAAGGGGCGGGCTCTGGTGGACTTACCTGCTGAGCCTGCTGTTTAAAGCCGGGTTCGACGTGGCCTtcctgtacatcctgtactACATCTACGACGGGTACGACATGCCGCAGCTGTCCAAGTGCTCGCTGGATCCGTGCCCCAACACCGTGGACTGCTTCATCTCCAGACCCACCGAGAAGAAGATCTTCACGCTCTTCATGGTGGTCACCTCCGCCGCCTGCGTCCTCATGTGCGTGTGTGAGATGCTGTACCTGATCGGGAAGCGCACCTGTAAGGTGCTGATGATCCGACGGGCCGAGCGGGTGTACCTGGTGGAGCGTGGCGACGTCACTGATCTGGGAGCTGCTAGGTCCAAACACCAGTGGAAGGACCCGACTCTGGACGATGAGGAGGAGCAGAATCTCaccaaacccaaacaaacacagGCTGTTATGGAAAAAACTACCATTTGATGATGAGTGGGATGGAGGAGTTACTTCCTGTTTACCTCAATTTCATCTCAGACATTATCACATACCTGACATTATCAGAAACCTGACTTTATCTGAGTGTTTTGAGCTGTGTAGTCCAATAGGCTCAGGGTTTGGCACATTATAAAACCACTGTAAGCTCTCAGCAAGACTAAGATGCTGATACTAGgcttccatcagcagccggagtccgagagagagagagaacagttgGTCATGCTCTCACTACATACCACTAGTCACCCTGAATATGGGTGTCTGTTAAATTGCCTTTGGGCCTTAAGTTgttgttttatcatttaatgATGATAGTGTGGAGTTATAGGCTGTGGACTGTTCTGTTTACCttaatttatttcagatatttcagATATTATCACATACCTGACTTTACCTGAGTGTTTTAAGCTGTGTAGTCCAATAGTTAGTTATACCATATAGCTATGGTAAGTGCTGGCTCAGGGTTGGGTACATTAAAACACCATTGTAATGCAATTATGCAGGTTTAACAAAGTACTAATTGGAAATTAACAGGAGCTTAATGAGCTACGAATGTCTCAGCAGACTAAGATGCTGATACTgcttccatcagcagccagaatgcgagagagagtacagttggtCGTGCTCTAACTACCTACCACTAGTTGTTCTGGATAAGGGTGTCCGCTAAATGGTTTAAATAAGTGATGTACAGAATAGGAtgtataatacataaataaatacaagttTATTTAAGGAAAGGAGTAAAAAATTAGCCAGTTAATTGCCAACTACTGCTATAGTTAAGCATAGCAAGCACATTAAATTGGTGTTATATTACTCCTTATACTTTAAATAGATTGTTACCATTATTGTCATGTGCTGAgttacactatattttatatataactatattacTTTAAGACTTATACCTCACTTAAATTATGCAACCCCCCCAGCTTTTTTCCAGTCCTTCTGAATCTGAAACTACTTGGTGTGTTCTTCCAATGTTTTTGGCT

Function

GO: NA

KEGG:

id description
K07624 GJB5, CX31.1; gap junction beta-5 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117700 lncRNA downstream 9631 41446143 ~ 41452705 (-) True G87375
TU117692 lncRNA downstream 33476 41427800 ~ 41428860 (-) True G87371
TU117678 lncRNA downstream 55115 41404016 ~ 41407221 (-) True G87362
TU117639 lncRNA downstream 134840 41321614 ~ 41327496 (-) False G87343
TU117649 lncRNA downstream 134840 41325598 ~ 41327496 (-) False G87343
TU117708 lncRNA upstream 10866 41481787 ~ 41489197 (-) True G87382
TU117718 lncRNA upstream 75802 41546723 ~ 41547655 (-) True G87391
TU117738 lncRNA upstream 134908 41605829 ~ 41609756 (-) False G87410
TU117739 lncRNA upstream 134908 41605829 ~ 41609756 (-) False G87410
TU117741 lncRNA upstream 134908 41605829 ~ 41609756 (-) True G87410
XM_022673320.1 mRNA downstream 102874 41348855 ~ 41359462 (-) True rtraf
XM_007241976.3 mRNA downstream 209908 41233845 ~ 41252428 (-) True LOC103035710
XM_022673314.1 mRNA downstream 311064 41107720 ~ 41151272 (-) True gpr137c
XM_022672516.1 mRNA downstream 378728 41026870 ~ 41083608 (-) True wdhd1
XM_022673309.1 mRNA downstream 438690 40994368 ~ 41023646 (-) True gch1
XM_007239464.3 mRNA upstream 285811 41756732 ~ 41759087 (-) True gpr135
XM_022672519.1 mRNA upstream 302146 41773067 ~ 41804870 (-) True LOC103040189
XM_022673323.1 mRNA upstream 1038201 42509122 ~ 42655749 (-) True LOC103028306
XM_022673322.1 mRNA upstream 1043349 42514270 ~ 42655749 (-) False LOC103028306
TU117264 other downstream 691865 40764092 ~ 40770471 (-) False LOC103044865
TU117171 other downstream 926002 40533368 ~ 40536334 (-) True LOC111193261
TU116404 other downstream 3393284 37982874 ~ 38069052 (-) True G86432
XR_001518670.2 other downstream 4360755 36591633 ~ 37101581 (-) False nrxn3
TU117804 other upstream 324614 41795535 ~ 41804888 (-) False LOC103040189

Expression Profile