RNA id: TU117700


Basic Information

Item Value
RNA id TU117700
length 6361
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G87375
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 41446143 ~ 41452705 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTTTCACATTTGCTTTATTGACAGCTTGGACAGTACAATAATCCGATTCTATTGCCTTGATAAGATGCTTACAGGTACACTGCGCCACTCTGTAAACATGTGTGCTGTTGTGGAAGCTGAGCTCAGCAGATCTTCAACAAACATTCAACGAAACTGGGTTTAATAATGTGTATGTGTTCATAATAACTATATTAATGTCAATGACCCCGTTTACACCCGGTCACTTCATGCGCTTTGAGAATCAGGATTAAATCTGGATCATTCCAAACCACCGAATGCACATAAGGAAAGTTTAAACGCATGTGAGattcaattaaatcaaacacatccTGAAGTGTTTTGAGATCAGATTTGTATGTTTAGTGATGGAAATTTTACCTGGTTAAAATGCGTCTTAGACAACCTCCTAGAGTGATTTGAGTGATGTGAATTGTATCTGGTTCAAATGCTTCCCAGACAAAATTctaaagtggtttgagtgatcttGTTTGTATCTGGTTTTgatgcatctcagaccacctcttgaagtggTTTAAGACATTCAGATTTGaatctgtttttaattaaatgtgtcttagaccatctcctgaagtggtttgagatTGAGTTTGgatctgtttttaattaatgtgtcttagaccatctcctgaagtggtttgagatTGAGTTTGgatctgtttttaattaatgcgtctcagaccatcttctgaagtggtttgagtgatctaATTTGTATCTGGTGTAAACGTGTCTCCTACAATCTCCTGAAGTGATGTGTTTGACTAGACTAACTGGATTGtaatctgtttttaattaagGTGTCTCAGTTAATCTTCTGAAGTGTtttgagtaatcagatttttatctgttttaaatgcatcacagaccacctcctgaagtatTAAATGAATGTCAGACAACCTTAAAAAGTGGTTAGAGTGATCAGATTTgaatctgtgtttaattaatgtgTCTTAGACCAcgtcctgaagtggtttgagtaatGGGATTTGTATCTGGTTCAAATACGTCTCAGATCACCTCCTTAAGTGGTTTGAGTAAAAGGATTTGAATCTGTTTTCAATTAATGCGTCTcggaccacctcctgaagttgTTTGAGTATTCAGATATGttataaatgtgtctcagaccaccttctgaagtggttttaaAGATAGAATTTATATCTGGTataaatgcatctcagaccacctcttgaagtgTTTTGAGAGATCAAATTCGAATCCGTTTTTAattaatgtgtctcagaccacctcctaaagTGATGTGTTTCAGTGATAGGATTTGTATCAGATATAATGTAAATGCATATCAGACCACTTTTTGAAGTGGTTTAAGTGATCGGATCCATATCGGTTATAAATGTGTCTTCTGAAAGACCAACTTCTGAAATGGTTTGAGTGTTTTAATTAATGCGTCTcggaccacctcctgaagtgattGAGTAACGGGATTTGTAAGAGgtttaaatgcatctcagaccatCTTCTGAGATCTTGAgttagtttaaatatatattttcagtgcATTTACATTTGCATTATCAATGAGAATTAACTGAGTTTATAAAGAACGCTTTTCTTTAATCACCACCTACGTCTGTGGGAGGAGTCTCCCGATAtctgacgctgattggtttaaaaAGAGGACCATGTTACACCTcagcatgtttttaatttaatgagtgtaacagattcccctcagattccttttattaaGGTTttgtaaataagggttaatctacagttacagtagatacagaatcaccagcactgtaatctgtgtaATGCTGATTAGTGCAGGACAagattatatgatatatttaatctatatttttaCAGCACTTAAGAAAAAGCAACAACTAAAACTCCTgttataaatgcaaataaatgagcaAACTACTAATTTTGCATATTTCATACAACACAGCAACTGATTTAAGTGACTTAAGTGACCAGATGTAAAAGGGGTcagttaaaatgtgtaaaatctgTGTAATGCTCAATGATATTCAGTAAGTCAATGCGTCCCGTCGCATTCATTCAGAATGAACCCGTTAACGTAAAgcattaaatatatgtatatatattgtggttcAGAATATACAGCatataacaaatatagttcTTCTTCTTAGACGAGACACTCTATTGCGATATACATTAGTGTTTGGAACAATGCCAGTAATCTCTGCTGAAAACCCTTTAATAAAATTCACAAGTCACAACAACTAATTAATAGCCAGATCGGTCAGTTTAACGTAAGTCAGTGAAAGCAACGTGTAAACAATAAAATCAGCAGGTAAACATTTCTAAGCAACTCACAATGACTCAGGTCGAAAACGTTGCTTAAATAAGAGAGCTATAAATTATAATACTGCTTAAATTAGAGACCTCCTGGAATGGGTACGGTTCTGGTCTGCAGCAACACTTGCGTCACGTTCCTACAAGAACTGCTGTTCTCATCACGGTGAGGTGTAGAAGTTGCTATTCGGGGATGATTTGCAACACCTTGGATTCCTGAAATAAAACgcgagtggtgtgtgtgtgtttctgaaacGTGTCGTAGTTTACATCCACCTGAATAGTTGTTAGGATACAGGCTTCACCTTCGAGTGCAGCCCTCCCCCCTGTGTGTGCTGTGAACACACCTCCGCTCTCTCTGGCACAACAATAGCAGCCCAACTCCTCACGCCGGCCAGAAATCTGCTGTGCCAGGTTGTCATGGCACTCAGCATTGCTTTCCGATTGGTCTTCGCAGAAAAGTCCCTGAAGGACGTCCTGTTCCAGCTCCTCCCAGTGGTCCCAGGCAGGTTTGTTGGAGCCTGGTTCGGGCTCAGAGTCGGTCAGGTCTGAGTCCCAGTCGCTGTCCCCGACGGTGGACGCTATAACGAAGTCTGCCCTGGAACCACTGTCCTCTGAATCATTCGAGTCCTCATACACAGAATGACAATCCGTACCCAGAAGGTGGCAATCCGGAGCCGCCAGGTACACAAAGCTGTCGGTGGACAGAAAGTCACATTCGTCAGGATAAGGGCAGGGTTTTGCAATGGCTGTTGGGGGTGGGGGTACTTCTGGAGCTGCTGGGGTGGCCACAACGTCCTGGGCAGGAGGCGGCATAACCGAAACTGCCAAATAGACAAAACTGTCAGTTGTGACAAAAGGATCCATATCGCCAGCATCCAAAAGAGCCCCTTTCTTGACCTCGTGTTTTGAAGGAGACAGAGGCAAAGGCACATCAGTCGTTGATGTGTTCACAGTGTTACAAATCTCATGATGTACAGATCCTTTGTTGTTCACAGATCTCGAGCACTCCTGAATGACTGTGACTTTGGCTTTGTTTTCTTTGATACTCCTCCTTTCTCTGCTCAGCTCCTCACCGTCAGTTTTCAGCACAGTCGACTGTCTGGAATTGCTTATTTGTACTGTGCACGTCCCCATCGCTCTGTCGGTCCCTTGCTCATTCACACCTTTTGAAGTGTTAAGTGAAGACGCACTACCTAATACAATGTCTAATTCAAACACGGATCTGTCACCATCAGACGTAATGTCCTCTTTACTTGTCTGGCTGGGATTAGACATGTAAACCCCACTGGAATCGGAGTCCAAGGTTAGATTAGAGTCTGGCGATCCAGTGAGGCCATATTTGCTCTCCAGCTGATCCTCAGTGTCCAGATCCAAGAGGGACGGGACTCTTGGAGCTTTTGATTTTGTGAGAATTTGTCCTGTTGGTTGCGTAACAACAATAACACTGTTCCCTTTCAGGtgcaaatcacactgtgatgtGATTATATCATCGTTAAGTTCTGAGTCGATAGATTCCTCTCTACTCAGTCTCTCAAGGTCCAAGAGGTCTTCAGCACCCAGTTCTGAACTTGTACCAGAGGGGGCCTGTGAGCCACCGAACCCTGATGGCGGGTGCAAGAGGGGCCAGCGCCTCAAGGAGCCTAAAGTCTGAGAATCTGTGTCTTTCCAAGCTTCGTCCCAAAGCGAATTAACCATCTCCAGTACGGCTTCCCAGTTCTCGTTCTCAACCTCAACCTCACATTCAGGATTCGGGACATTTTCTTCAGAGGTCTCCTCGGGTTTCTCTTGAACTGGTGGCATTTTACTACAGCACTCTACAATATCCACCTCAACCACTTTATTTTTTGATGactctgctttcttttcctcctccaTTTGCCTCAAGATCTTCCAGTCCTGCAGTGAGCAATCCTTGAGTTCACTTTTTAAATTGGACTTGCCTAGCTTGCCCTCCACTTTCGCCTGGTGCTCTGGAAACGGAGAAAGGCGAGGCATTGGCTTTTTGTCTGAGACGCTCCGTATAAGAAGAGACGGCAATGGAGGAAGGATGGGAAGATTGTGAACGGCGCCACCTTGCCTCACCGTCCTCCTCCTTCCAATCAGCCTTCGTGGCCAAGTGGACTCCATTGAAGTTGTGCAAATTGTAGGTCCCTTTGGTTTCTGTGTTTGCAAGAGGGGTGCAGTGTCATTTTCCGGCTCTGGTGTGagcggtggtggtggtggtggtggttgctCACTGAATAGACTCGATAGGCTTGGGTTTAAAAGTCTCAAACAGTCTTACGGTATTCCCATCTCCTCTTTGTTCTTGCTCTTGCCCACCCTGCATATCTTGGCCACACATGAGGGCACTTACTGACAGTTCTGAGAGAGGAGGTCTAGGTGACGAGGGCTGGGTGGGCAAAGACTGTCTGTGGAACTGCTGATGGTAGGGCAGGGGCGAAGGGGAGAAGAAAACTGAGGGAGTGTGGGTACCGGTGGAGAAGGGGGATCCAGAAAAGGGAGAAATTTGTGGGGAGGTCATACTGTTCGGGAAGAAAGCCACCCCGGGATTCAAGTAGTTCTTTTCTCCTGGCGAAAGCTCCAGAGGATCTGGAAACTTGGGAGGCGTAAGAACTTTCCAGGAGTGCCGACAAAGGTTGTCCTTCTTGCCACTTTCCTGAAGAGGATGCCTCTTGTTCATGGACCCACCAGGAGCTGAAGAACAGGACACACTGGGAGAGGTCGACCGTACAAATCCTCCCGAAGGCCTGAGCTCATCATTGGCCAGCTTTAAGGAATCAAAAATGAACCTTTCGTCCAGTTTTCTCCCACTGGTGAGAAGTACGGATGACCTGGTGTCAAACATGTCGCCTCCGAGGGAGCCATTACTTGAGAAGTCAGTTTCTCGACCTCTCCTGGAGCCCAATGTGCTGTGAGCAGAGCCATGGTCGATGTGCTCATTGATGCACATTGTGTCGTAGATGGAACGTTGAGGGATGTAGCCATCTTCGTTGTAGCCTTCCCGTTCATTCTTCTTTGAGCAACAAGGACTCTGGCGAAGGCAACCTGGTCGACTGAGCGGCTTCCCCATTTTTATGAGCTCCAAGATGGTTATGGACTGGAGATGAAGATTAAGACGAAGTTCTTGTTaaatcctttgtatcctttgtttGATTGTGCAACTCCATCAAAACTGAatgaaaatggttaaaaattCTTGACAAGAACTTTAACAAGCAAGAAAGTCTTAAAACATCTGCGaatgtaaataaagtttcaagtttttttatacataatatacatatataaacacatccTTGTAATCGAGAGTGGTAGCATCAACTGTTCGTAGCATGAAAGCTTTACAGAGTTCAAGACTTCAAGGATAAAGATCAGAATCTCAAGTGCAGGATGAGCAAAAAGAACGAATGCAAAGGATGTTCACCTACAGACGCATCTCCTTCTCGAAGTCTCGAAGTAACTGTTCACCATCTGCTCCGCTCAGCAGAGAGATCGGACAGATCGGACGCTCCTCGCTCGCACCGCACTTCCAGTCCTACATCCAGTTGGCCGGAAAAACACGAAATAAAACTTGCAGCAACAAAACAGGGCAACTCACTGCTCCTCCTGATCCAAATTTGGCATCAGCCTTCCCCGGGGTCTCTGCCTACTTTGCTTCTTCATGGCGATAATCATTTTCATCACTTCCATTAGAGAGGATGAGTAGCCTCTCTCCAGAAATCAGAGCATCAGTGCCAGAACAGATGGAAGACCCCGGTGCCTCGCTCTCCTGCCGTCCGAGTGTGGAACGAGTCCACAAAAAGCCGGGCATAGTCATAGTCAGTCCGCAGGTCAGCTTTACCGAGAGCTCAGCCTTCGGAAAACGATCCCGTCTCAGTCTGAATCGCTGATGGTTTGATAAATGGCCTCCTATTTCTACACCAACACcagctctctctttttttttcctctttcgctcgcttgctctctttctctctctctaacactcacttacttactctCTCACTCAACCCCCCTCctttcgctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117692 lncRNA downstream 17283 41427800 ~ 41428860 (-) True G87371
TU117678 lncRNA downstream 38922 41404016 ~ 41407221 (-) True G87362
TU117639 lncRNA downstream 118647 41321614 ~ 41327496 (-) False G87343
TU117708 lncRNA upstream 29082 41481787 ~ 41489197 (-) True G87382
TU117718 lncRNA upstream 94018 41546723 ~ 41547655 (-) True G87391
TU117738 lncRNA upstream 153124 41605829 ~ 41609756 (-) False G87410
TU117739 lncRNA upstream 153124 41605829 ~ 41609756 (-) False G87410
TU117741 lncRNA upstream 153124 41605829 ~ 41609756 (-) True G87410
XM_022673320.1 mRNA downstream 86681 41348855 ~ 41359462 (-) True rtraf
XM_007241976.3 mRNA downstream 193715 41233845 ~ 41252428 (-) True LOC103035710
XM_022673314.1 mRNA downstream 294871 41107720 ~ 41151272 (-) True gpr137c
XM_022672516.1 mRNA downstream 362535 41026870 ~ 41083608 (-) True wdhd1
XM_022673309.1 mRNA downstream 422497 40994368 ~ 41023646 (-) True gch1
XM_022673317.1 mRNA upstream 9631 41462336 ~ 41470921 (-) True LOC103044494
XM_015603470.2 mRNA upstream 9631 41462336 ~ 41470921 (-) False LOC103044494
XM_015603469.2 mRNA upstream 9631 41462336 ~ 41470915 (-) False LOC103044494
XM_007239464.3 mRNA upstream 304027 41756732 ~ 41759087 (-) True gpr135
XM_022672519.1 mRNA upstream 320362 41773067 ~ 41804870 (-) True LOC103040189
TU117264 other downstream 675672 40764092 ~ 40770471 (-) False LOC103044865
TU117171 other downstream 909809 40533368 ~ 40536334 (-) True LOC111193261
TU116404 other downstream 3377091 37982874 ~ 38069052 (-) True G86432
XR_001518670.2 other downstream 4344562 36591633 ~ 37101581 (-) False nrxn3
TU117804 other upstream 342830 41795535 ~ 41804888 (-) False LOC103040189

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU202767 True 599 lncRNA 0.46 2 NC_053125.1 38171271 ~ 38292545 (+)
striped catfish (Pangasianodon hypophthalmus) TU202767 True 3784 TUCP 0.44 1 NC_047604.1 25003983 ~ 25007766 (+)