RNA id: TU117738


Basic Information

Item Value
RNA id TU117738
length 3163
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G87410
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 41605829 ~ 41609756 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACGAATCATAATGTAaaacacagcgctgtgtttCTGTTCCTTTATTGTGCACATGATTTATCATTTACATGATATGAGACGGACAGCGTCTATATCGTCCCTCTGATGGTCATGTGATCAGGTTCTGGGTGTTTTAAAGCGTCTGTTCCTCTCGTCTGCGCTATAAACAGCTTTTATAATCATGAGAAATATAACGGAACATATAAAACCAGCCTGGATCTGGATTAATGTAACAATATACAGGTGAGTTTATCTTCAGGTAATCAGCACACAGCCTCACTTTACTGCAGCACCCATATATAAAATCATATactcaaaatattttacaatatactctATTCATATATCTGGAATATACTGTCAggatataacaatatatttcactttcttcctcttcttaTAAGAGCATCTCTCATCAAAAACGTAGTATTCCTATTAtttatgtctctctcttacattcTCCTTACATCCTGCAAAAATTTTATTTTGGCAAAAGCATGTGAAGGCATctctatttatgttttaaatatgttgtaaaATATTAGACAATCACTTATTATGTTAAACCTGTTACTagaaagtgtaaaaaaagaccttattacaactttaaaagtgcttaaaccttattttaaacattaattttgcGTCAAAAAGCTTATTTCCGTGTAACGATGTAATGGAGTAAAGTTGACCAAAGCAGAGAATGAAGCCACGCCCCCTTTTTGTGGGTGTGTTCTCTGTACTTTTGTGTTTTCATAGCCAGTCTGGCTACTGCCCAGAATGCACTGCACATGCAAGAAGACAGAGTGCTGCACCAAAGAACTCGCAGCCAGGCTTAGGAGATTTAGGGTAGGTTAGctatgatgctaacagctggtcTCCTTCGGAttggagctgtgatgctaacagacacagcagccaggCTCAGAGGGTTCTGAGCTAGTACTGtaagctgtgatgctaactgCTAGTTTTGGCAGTGTTAGGGCCACAATACAATGCTAACTGCTAGCTTTGGGTGGATttggagctgtgatgctaacagataCAGCAGCCAGGCTCAGAGGGTTCTGAGCTAGTACTGtaagctgtgatgctaactgCTAGCGTCAGCAGTGTTAGAGCACTAATACAATGCTAAGTGACAACTTCAGATGGATTTGAAGTtgtaatgctaacagacacagcagcgaGCCTCAGGAAATTTAGGGTGAGTTAGctatgatgctaacagctggtcTCCTTCGGAttggagctgtgatgctaacaggcaCAGCAGCCAGGCTCTGAGGGTTCTGAGCTAGTACTGTAACCTGTTATGCTAACTGCTAGCATCGGCAGTGTTAGAGCCACAATACTAACAGACATATTGTAGCAGCTGGGTTGGGCACATATGGTTTGGGTTAGCTGCGATGCTAACAGCCACAGCAGCCAGGCTCAGAAGGTTTCAAGCATGTTAGCTGCGAATGCTAACTGCTGGGTTAGGTTATCGCCACAATGCTAAAAGACAGGCTAAAAGACTGAGCAGGGGTGGGGGTGTGTTAGCCAGGATGCTAACAGAGCGTCGGCAGTGTTAGAGGCACAATACAATGCTAACTGCCAACTTCAGGTGGATttggagctgtgatgctaacagacacagcatccAGGCTCTGAGGGTCCTGAGCTAGCATCGtaaagctgtgatgctaactgCTAGCGTCGGCAGTGTTAGAGCCACAATACTAACAGACATACTGTAGCAGCCGGGCTTGGCACATATGGATTGGGTTAGCTGAGATGCTAACAACTAACTTCGggtggatttggagccacaatgctaacagacacagtagAAAGCCTCAGAAGGTTTCAAGCATGTTAGCTGCGAATGCTAACTGCTAGGTTAGGTTATAGCCGCAAAGCTAAAAGACAGGCTAAAAGCCTCGGCGTGGGTGGGAGGTGGTTTAGCCAGGATGCTAACAGACATAGGTTTGGAGCTAGTACTGTAAGTGTGATCCTAACTGGTAGCGTCGGCAGTGTTAGAGCAACAATACTAACAAACATATCGTAGCAGTTGGGCTttttcacttttatgcaaataagctgttgctggccaaaCTAAGCATTAACCACacgttagcttgtgctaaatggcaaaacacaaacaagctagttcactCTTTACACTCTCTGCTGACTTGtcacggacagtaggtacagagtCCTCCCTCTggtgaagtctgctggctaatccatcctgctgtgtactgtctaaggttctcaaccagcagactgaaATGATTACAGATTAGCcaaatattattcattatttctctaaaaaaaacgtaattgatcttatattattatcttattattattattattttatattcttaaaacaacacattttaacacagtTACAGATGCCTTCAcaagccaaaataacaaaatatcacaGTTTTTGCAGCACAGCCCCTCCTACACAAACTCCTCCACATATAAAAAACATGCACGTCTCACTCTAGGACACTTCCTCTGAATCTTTCAGTAACTTTTCCCTCACCTCGAcatttccttccttccttcctttcacTTCCtcactccttccttccttcttcctGAATCTGTCGCTCCGTAAATGCTGGAGACGAAAGACGTGACCCTCGAAACTTCCTGCATCCGACATACAGAACTCTCACGTACACCAGGAACCTGCGCtgcatcctctctctctctctgactgccCTCAAAAACACACtcgtgcacacatacacacactcacgtaCACTCGCGCACAGGAAGTCCCAGTCtgggaaagaaaaagggaaaTCCAGCAGATTCCCTATTAAACACAGATATGGACGAGAGAGCAAAGTGTAGTAAAAACAGACTGAAATCTGATCAAGTTCCAGCCCCACCAGCAgctatatagtaataataataagtccATTCTAACTCCAGTCTCCACACATGCTCCATGCTCCGCCCTTTCTTGGCCCCGCCCTCTCTTGGCCCCGCCCTCGTTCCTCCGTGTTCAGGGTGGTACTAGTGCCAGAAGAGGGCAAAGCCAGGCCGGAGCGTCCAGCTGGGGGCTCACACCGAGCTCAGGAACAAGCCTGCATTCTCCTTTCTGACCACAAGGGGGCGCTAGGCCAGAGAACGCTGCCTGGGCTTGATCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117718 lncRNA downstream 58174 41546723 ~ 41547655 (-) True G87391
TU117673 lncRNA downstream 102236 41397757 ~ 41503593 (-) True G87360
TU117708 lncRNA downstream 116632 41481787 ~ 41489197 (-) True G87382
TU117700 lncRNA downstream 153124 41446143 ~ 41452705 (-) True G87375
TU117692 lncRNA downstream 176969 41427800 ~ 41428860 (-) True G87371
TU117747 lncRNA upstream 12127 41621883 ~ 41700309 (-) False G87414
TU117748 lncRNA upstream 12127 41621883 ~ 41700875 (-) True G87414
TU117749 lncRNA upstream 12127 41621883 ~ 41700875 (-) False G87414
TU117759 lncRNA upstream 66877 41676633 ~ 41678309 (-) True G87423
TU117760 lncRNA upstream 68043 41677799 ~ 41678919 (-) False G87423
XM_022673317.1 mRNA downstream 134908 41462336 ~ 41470921 (-) True LOC103044494
XM_015603470.2 mRNA downstream 134908 41462336 ~ 41470921 (-) False LOC103044494
XM_015603469.2 mRNA downstream 134914 41462336 ~ 41470915 (-) False LOC103044494
XM_022673320.1 mRNA downstream 246367 41348855 ~ 41359462 (-) True rtraf
XM_007241976.3 mRNA downstream 353401 41233845 ~ 41252428 (-) True LOC103035710
XM_007239464.3 mRNA upstream 146976 41756732 ~ 41759087 (-) True gpr135
XM_022672519.1 mRNA upstream 163311 41773067 ~ 41804870 (-) True LOC103040189
XM_022673323.1 mRNA upstream 899366 42509122 ~ 42655749 (-) True LOC103028306
XM_022673322.1 mRNA upstream 904514 42514270 ~ 42655749 (-) False LOC103028306
TU117264 other downstream 835358 40764092 ~ 40770471 (-) False LOC103044865
TU117171 other downstream 1069495 40533368 ~ 40536334 (-) True LOC111193261
TU116404 other downstream 3536777 37982874 ~ 38069052 (-) True G86432
XR_001518670.2 other downstream 4504248 36591633 ~ 37101581 (-) False nrxn3
TU117804 other upstream 185779 41795535 ~ 41804888 (-) False LOC103040189

Expression Profile