RNA id: XM_022673323.1


Basic Information

Item Value
RNA id XM_022673323.1
length 3680
RNA type mRNA
GC content 0.56
exon number 4
gene id LOC103028306
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 42509122 ~ 42655749 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGTCGGTAGGAGCAGCTCGGCGGCGGCGCGCGGTGCTCGGTGCTCGGTACCCGGTTGCCCGGTGGTGACGCGACGGATTGCTTGCGTTTTGTTGGAATTGCAGGACGGGGATGCGCGTGCAGCTTTAATTGCAACATTTCCCCGCGCTTTTGTCCCCCTCTCCTTCCCGGGATTGCTTCGGGAGCGCGCGGGTGGAGAGTTTCTACTTTACTTGGATGTTGGATGTTGCATGGCGGGAACGCGCGCGGAGCTGCGCACCACCACTGCTGGATTAGCGCGGTCCGGAGGCAGCGGCGCGCGGAGCTGCCGGCTTCTCGGTGGGCGTGAATGACGGGCATGGTCTCCTGCCGCACGAGGATGGCGCTCTTCATCGTGGAGATAGCTTAAGATCCTCCCTGAAACATCTCGCGCGCTCTGCTCCGACCGGAACTGGGATTTCTCTCAATCGCTCGCTGTGTTGGATCTTTTTGGATTGTTTGCGGCATTGAAGAGTAGTGTTTTATGCgcgtgtgagtaagtgtgtatgcgggagtgtgtgagtgtgtatgagtgtgtgagtgtgtatgtgcatatgtgcgagtgtgtgtgcgcgtgatGGATAAGGGCTATGAAGGCTTGGATGTTGCCCCGCCGTCTAGCCCTGCACCAGCTGGGGCAGAGAAGAGCAGCAGAACGGGAGAAAACGACATGTGAGGTGGGAGAAGACCCCCAGCCCCTGAGGATCCCACCCATCCGAGGCTGCCATTCCTTCATCGAGgTGTCCGAACCTGATTTACAATGGAAAAACTGCTGGTCTGCCTGTTGGTTATTGGAATGGCAGTGAAGGCCCAGATCTGTCCGAAGCGCTGCGTCTGTCAAATACTGTCGCCGAACCTCGCCACACTCTGCGCaaagaaagggctgctcttcgTCCCGCCCAACATCGACCGGCACACGGTGGAGCTGCGGCTTGCCGACAACTTCATCACCAGCGTCAAGCGGAAAGACTTCGCCAACATGACCAGACTGGTGGACCTCACCTTGTCACGGAATACAATAAGCTACGTCACGCCATATGCATTCTCAGACCTGGAGAACCTCCGGGCCTTGCACCTCAACCACAACCGGCTCACTCGGATAGGCAACGACACCTTCAGCGGCATGTCCAAGCTGCATCACCTGATCCTCAACAACAACCAACTTACCCTCATCCACATGGGAGCCTTCAATGACCTCCTGGCACTGGAGGAACTGGACCTTTCCTACAACAACCTGGAGACTATCCCCTGGGAGGCCATCCAACGGATGATCAGCCTGCACACCCTCAGTCTGGACCACAACATGATCGAGTACATTCCCGAAGGAACGTTTTCCCTCCTGCAGAAGCTCAATCGATTGGACGTAACCTCCAACAAGCTCCAGAAGCTTCCGCCGGACCCTCTGTTCCAGCGTGCCCAAGTCCTCGCAACGTCTGGAGTGCTCAACCCTTCCTCGTTCGCCCTGAGCTTCGGAGGAAACCCTCTGCACTGCAACTGCGAGCTTCTTTGGCTACGGCGCTTGAGTCGAGAGGACGACTTGGAGACTTGCGCCACTCCGCCTCATCTTTCTGGACGCTACTTCTGGTCGATTCCGGAGGAAGAGTTCCTCTGTGAACCGCCGTTGATCACTCGGTACTCTCACGAGATGAGGGTCCTCGAGGGCCAGAGGGTTGCACTAAAGTGCAAAGCGAGGGGTGACCCCGAACCTGCGATCCACTGGATATCTCCAGAAGGAAAGCTGGTCTCCAATTCCTCTCGTGCCGTGGTCTACAACAACGGTACGCTGGACatactgatcagcacagtgaaggATTCGGGTTCGTTCACCTGCATCTCCTCCAATCCGGCAGGAGAAGCCCATCAGACTGTGGACCTAGTCATCATCAAGCTTCCTCACATCAGCAACAGCACCAACAACATCCAGGAGCCGGACCCTGGATCCTCCGACATCTCCACCTCCACCAGGGCCGGCGCAAACGGAAGCAACCACACGGCAGACTCCAAAACCAGCCTGGACAAGCGGGTGGTCATTGCCGAAGCCACCTCGTCCACCGCGCTCATCAAATTCAACTTCCAGAGGAATATACCTGGAATCCGCATGTTTCAGATACAGTACAACGGAACGTACGACGACTCCCTCGTTTACAGAATGATCCCGCCCACAAGCAAAAACTTCCTGGTGAATAACCTGGCTGCCGGGACGCAGTACGACCTGTGCGTTCTGGCGATCTACGACGACGGCATCACGTCCCTGACCGCCACCCGGGTGGTGGGCTGCGTCCAGTTCACCACCGAGTCCGAGTACCTGCGCTGCCACTTCATGCAGTCGCAGTTCCTGGGCGGCACCATGATCATCATCATCGGCGGCATCATCGTGGCGTCAGTCCTCGTCTTCATCGTCATCCTCATGATCCGGTACAAGGTGTGCAACGGCGGCGACCGCGGCAAAGGATCGGCCGTCACCAGCATGCACTCGCAAACCAACGGGGCTCAGTCGCAGGGCTGCAGCGTCACGCCATCCGCGTCCAAAGAGGGCGCTCTGGCGTTGGAAGGGGGCGAGAAAAGCGTCCAGAAGGTGGCGCCGCCCCCTCCGGATTCCCTCACCCACTCCTCGGAGACCTCCCTCCCAGACTGTTCCACCACGTCCACGTCCGTGGTCAGCCCGAGCTGGACGACTCCGGGCTCGTCCGGGTCGCTCAAGCCAAAGCGCAAACCGGCCCCCAAGCCGGCCGAGGCCAAGCCGGACGCTCTGACCAATCCCGAGACTCAAAACACCAACCGGAACAACTCCACCACGCTGCAGCAGCCGCTAATCCCCGCCCCCACGCTCCCCTCACGCTTTAAAGACACTCCCATCCTGCGGAGGGCGCACCCCAGACCCTCCGCGACCAAGTACATGACACTGCCGGTGGAGGGGGTGCGCGCCAAGCGGCGGTACTCCCTGAACGAGGACCTGTCCAAGCACCACTGCTTCATCGGGCAGGCGCACAAGTTCGGGAACATGTGGTCCAAGCGGAGTCTGTCCATGAACGGCATGCTAGCGCAAACGGAAAACTCGGATATAGATGttcTCTGAAAGTGcgaggatgaggaagaggaagaggaagatgatgaggaggatgaaGGTCGCCTTGATGGAATTCCCTCTCAACCCTCTGCTGACAGCCACCTCCATCCCCATAGCAACCGCATCCACTCAGCACCACTCTCGGAGCGCTGTTGGCGCGGGAACCGCACCGGTGCCTTCCTATGTTCTCCCGCCAGGAGCACCAACCGGAACCGAGCTTCGGCCCGATAGGGAATGTGAGCTAGACTGAGAGCAAACAGAGATATTTCACAAAAAAGCCTTTCTATTCACAGGAATAACGATTTCCTGCATTACTACAGagaagctcagaaaaaaaacaaaaacaaaaaacgacTATTACAGACTctggataaaaagagagagagagaaataaaaaaaaactgggacatgttattaaattgatattttttaaataaaaaaaaacaaaaatcaaggTTTTTCTTTTCGGTGACATTGATATTGCCTTTATTTGAAGGCtcggattaaaaaaaaagaaaaaaagaaaaagaagataaaatccATGTACAGAAAGAAGACAACATCTACTGTGTTGTTatgttgtgtaaaataaaaa

Function

GO: NA

KEGG:

id description
K16358 LRFN5, SALM5; leucine-rich repeat and fibronectin type-III domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117920 lncRNA downstream 27381 42481516 ~ 42481741 (-) True G87557
TU117914 lncRNA downstream 58929 42441130 ~ 42450193 (-) True G87551
TU117878 lncRNA downstream 318091 42169552 ~ 42191031 (-) True G87516
TU117841 lncRNA downstream 427377 42081467 ~ 42081745 (-) True G87481
TU117839 lncRNA downstream 447667 42061226 ~ 42061455 (-) True G87479
TU117969 lncRNA upstream 86463 42742212 ~ 42742415 (-) True G87603
TU117977 lncRNA upstream 142862 42798611 ~ 42804253 (-) True G87611
TU117979 lncRNA upstream 158340 42814089 ~ 42814309 (-) True G87613
TU117991 lncRNA upstream 170201 42825950 ~ 42888895 (-) True G87624
TU118001 lncRNA upstream 279757 42935506 ~ 42935821 (-) True G87634
XM_022672519.1 mRNA downstream 704252 41773067 ~ 41804870 (-) True LOC103040189
XM_007239464.3 mRNA downstream 750035 41756732 ~ 41759087 (-) True gpr135
XM_022673317.1 mRNA downstream 1038201 41462336 ~ 41470921 (-) True LOC103044494
XM_015603470.2 mRNA downstream 1038201 41462336 ~ 41470921 (-) False LOC103044494
XM_015603469.2 mRNA downstream 1038207 41462336 ~ 41470915 (-) False LOC103044494
TU117804 other downstream 704234 41795535 ~ 41804888 (-) False LOC103040189
TU117264 other downstream 1738651 40764092 ~ 40770471 (-) False LOC103044865
TU117171 other downstream 1972788 40533368 ~ 40536334 (-) True LOC111193261
TU116404 other downstream 4440070 37982874 ~ 38069052 (-) True G86432
XR_001518670.2 other downstream 5407541 36591633 ~ 37101581 (-) False nrxn3

Expression Profile