RNA id: TU118001


Basic Information

Item Value
RNA id TU118001
length 284
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G87634
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 42935506 ~ 42935821 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaccgtggtgcgcccaaagtgtaattacggtgcgcggcagtggacaactcagagatgtgcgtccggacgggactaaaattaccggaggagcacggagttcagagaaaaacagtagataattcagcctgtaattttctcagaggacgtctgagaaaaaaaacacctacatgatcgttctggacgggaataaaatcacagaggataaaaaaaaaaaacataaaagagaaaattacccagaaccccctgagacaCTAATACCCATACCCAACATATACCCAACGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117991 lncRNA downstream 46611 42825950 ~ 42888895 (-) True G87624
TU117979 lncRNA downstream 121197 42814089 ~ 42814309 (-) True G87613
TU117977 lncRNA downstream 131253 42798611 ~ 42804253 (-) True G87611
TU117969 lncRNA downstream 193091 42742212 ~ 42742415 (-) True G87603
TU117944 lncRNA downstream 414272 42511656 ~ 42521234 (-) True G87579
XM_022673323.1 mRNA downstream 279757 42509122 ~ 42655749 (-) True LOC103028306
XM_022673322.1 mRNA downstream 279757 42514270 ~ 42655749 (-) False LOC103028306
XM_022672519.1 mRNA downstream 1130636 41773067 ~ 41804870 (-) True LOC103040189
XM_007239464.3 mRNA downstream 1176419 41756732 ~ 41759087 (-) True gpr135
XM_015603469.2 mRNA downstream 1464591 41462336 ~ 41470915 (-) False LOC103044494
TU117804 other downstream 1130618 41795535 ~ 41804888 (-) False LOC103040189
TU117264 other downstream 2165035 40764092 ~ 40770471 (-) False LOC103044865
TU117171 other downstream 2399172 40533368 ~ 40536334 (-) True LOC111193261
TU116404 other downstream 4866454 37982874 ~ 38069052 (-) True G86432
XR_002650394.1 other downstream 5847575 36591633 ~ 37087931 (-) False nrxn3

Expression Profile