RNA id: XM_022673320.1


Basic Information

Item Value
RNA id XM_022673320.1
length 2617
RNA type mRNA
GC content 0.40
exon number 8
gene id rtraf
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 41348855 ~ 41359462 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGACCGGAAGTTGGCTCTTGTTAGTGAATGTACTGTGTCAGTGCTGGATCTGGAGCAGCTCGTGCTGagtataaatattaaatcacTGTTTTGAATTAAATCTGTGACTTTTTGTGAAGCAGCAGAATGTTCCGCAGGAAGCTCACGGCTTTAGACTATCATAATCCTGAGGGGTTTGATTGTAAAGATGAAACTGAGTTCAGGAATTTCATTGTTTGGCTGGAGGATCAAAAAATCAGACATTATAAAATCGAGGATCGCGGAAACCTGAGAAACATCCCGAGCTCTGAGTGGCCCAAGTACTATGAAAAGtatctgcaGGACGTGAACTGTCCCTTCAGTGCCCCGGAGAGGCAGGAGGCAGTGGACTGGTTGCTGGGTCTGGCTGTTCGGTTTGAATATGGTGATAACGtgGAGAAATACAGAAACTACACACCTGCATCAGAGGCCACTAATACCCCCCTCATGAACCTGGACAGCAACAATCCTGATTTTAAGGCTGGAGTCATGGCCCTCGCCAACCTGCTGAAGATCCAGAGGCATGATGACTACCTGGTGATGCTGAAAGCCATCAGGATCCTCATCCAGGAGAGACTGACGCCTGAGGCTATCTCTAAAGCCAGCCAGGCCAAAGagGGTTTACCAGTCGCGTTAGACAAGCACATCCTGGGCTTTGATACGGGAGATGCGACTCTGAACGAAGCGGCTCAGATCCTGCGGCTGCTGCATATCGAGGAGCTGCGGGATCTGCAGACGCGCATTAACGAGGCCATCGTCGCTGTGCAGGCCATCATCGCCGACCCCAAGACAGACCACCGGCTCGGGAAGGTGGGCAGATGATCGGCCCCTGCATCCCTGCCGGCctagaagctgtgtgtgtgtgtgagtgagtgtgtgtgtgtgtgtgtgtgtatgttggtgtgttggtgtgtgtgaatGTCTGTTTGGACAGAATAGAGATATGAATTTGAacaatttttttctgttgtttaaaaGGAATTGATTGATATGATATGTACCGGAAGTTATTTGATGTTTTTGGATTTGAGGAGAAAATTAAATTTCCAGTTAAGTTTTTTTGTTCTAAACCTACATTAGAATACACTAAGGCTACGTTtggttcacacagcaggtaaaagtgtctAAATCTGATCTCACCAaatcctgtctctctctttttttattaatttgatgcGCTAAAGAGCAGCAGCGCTTCaggtgaagtttcagtttcattttctccAGCCTCACAGGAGCTATCAAGGAGTACCAGTTGTAAATAGTTCAAGTTATTCTGCACTGGATTCaatgttaagaaaaaaataaaaaaatagtttttacatacagtttaacctttatttgcatttagcctcaaaagaaaattaaactgaCCAGCTGACGCtcccagcattcccaaatacagcgcttttagcccaTGCTCCCAACTATCAGGATTACAATGCGTATACACACAAAAATTCTATATTTCTACACCCATAGCCaattaacaggccaggatttttgtcagttGTCTTCCTGACGTTACACctctaaatcttgaggatttctatttaagcattacataaacaGCTTTCATGATTAataagaaacattactgaaaaacgtaattgtaatagaatctatacaaaaaaacatttaagtaaatctgctaatgtcaaaatataatgggTAAAATCATAAATTGGCTTATTCATGAACTTcatattaaaatcaatattttcctgaatacaaatcaatcaGTTTattcctccaaacctttagttttgttatgtttgtctagtttttacatctttattttcaaacctgcagaatttgatTTGAAAAGTCgttctgttactgatctggaataattaatttgtatttatttgtgtaaataagTTAATTTACTGCAGAttaaaagggttttgtatcacctacacctgtagcctgaaTACAGGGCCAGGCATTTTGAGCTCTGCTAAATCATCATCCCATTTCTGAAACCTTTACTCACTGCTGTCGTCCATTTTTCTGTCTGTGGCGAATAATTTGCCCTTTTTACAGCGAGActcaaattaattaaacttGATTGATTGGCTCATTCATAGATCGTAAGATTCTGATGTGGATGAAAACGAAACCGAAACTTCCTGTGAAACCCTACTGTCTTATATTAGATACACAGCTCTAATGCTTTAGACAGATTAGATACTTTTCAGATACTTTAATATGGGTCAAATTAAAAAGCTAGTGTGAACAGCCTGAAATGAACATCAGATTTGGTTCCTTGTGTGAACATAGACAAAGTGTGCCAAATCTGAATTGGAAAAATGtcagattcagtgtgtttttgctctTTACATAGAAAAACAGATAATACACCTGTGCTAAATATGACTACAAAGATCAGATTTCTGCATTCTTCCCTGCTGTGCAAATTTAGCAATGTTTTGTAGTGTTTTCATGAGTAATTGCAAGAAAAAATGTCCTTTTTGGCCAGAAACCAAGCTGTTCTATCTTCCTTTCTGGTTCCAGTTTTGCTTTTTTGATCTAAAACAACGAGACAGAATGATTGGTCCGGTATGTGTGCATGTAAATAAAAGCCATTAAAGCTAAA

Function

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0072669 tRNA-splicing ligase complex cellular_component
GO:0000993 RNA polymerase II complex binding molecular_function

KEGG:

id description
K15433 CGI99, CLE7, RLLM1; RLL motif containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117639 lncRNA downstream 21359 41321614 ~ 41327496 (-) False G87343
TU117649 lncRNA downstream 21359 41325598 ~ 41327496 (-) False G87343
TU117651 lncRNA downstream 23032 41321614 ~ 41325823 (-) False G87343
TU117641 lncRNA downstream 23812 41320175 ~ 41325043 (-) False G87343
TU117648 lncRNA downstream 23812 41321614 ~ 41325043 (-) False G87343
TU117673 lncRNA upstream 38295 41397757 ~ 41503593 (-) True G87360
TU117678 lncRNA upstream 44554 41404016 ~ 41407221 (-) True G87362
TU117692 lncRNA upstream 68338 41427800 ~ 41428860 (-) True G87371
TU117700 lncRNA upstream 86681 41446143 ~ 41452705 (-) True G87375
TU117708 lncRNA upstream 122325 41481787 ~ 41489197 (-) True G87382
XM_007241976.3 mRNA downstream 96427 41233845 ~ 41252428 (-) True LOC103035710
XM_022673314.1 mRNA downstream 197583 41107720 ~ 41151272 (-) True gpr137c
XM_022672516.1 mRNA downstream 265247 41026870 ~ 41083608 (-) True wdhd1
XM_022673309.1 mRNA downstream 325209 40994368 ~ 41023646 (-) True gch1
XM_022673303.1 mRNA downstream 490391 40844960 ~ 40858464 (-) True gnpnat1
XM_022673317.1 mRNA upstream 102874 41462336 ~ 41470921 (-) True LOC103044494
XM_015603470.2 mRNA upstream 102874 41462336 ~ 41470921 (-) False LOC103044494
XM_015603469.2 mRNA upstream 102874 41462336 ~ 41470915 (-) False LOC103044494
XM_007239464.3 mRNA upstream 397270 41756732 ~ 41759087 (-) True gpr135
XM_022672519.1 mRNA upstream 413605 41773067 ~ 41804870 (-) True LOC103040189
TU117264 other downstream 578384 40764092 ~ 40770471 (-) False LOC103044865
TU117171 other downstream 812521 40533368 ~ 40536334 (-) True LOC111193261
TU116404 other downstream 3279803 37982874 ~ 38069052 (-) True G86432
XR_001518670.2 other downstream 4247274 36591633 ~ 37101581 (-) False nrxn3
TU117804 other upstream 436073 41795535 ~ 41804888 (-) False LOC103040189

Expression Profile