gch1 (gch1,LOC107693131,LOC107723641,LOC107564951,LOC107583460,LOC107751761,LOC107680005)


Basic Information

Item Value
gene id gch1
gene name gch1,LOC107693131,LOC107723641,LOC107564951,LOC107583460,LOC107751761,LOC107680005
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 40994368 ~ 41023646 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673309.1
tgtacggtagtgtgtgtgtgagagtaaggagtgtgtgtgtgtagtttcaTTCTGACTGTCTGACTGTCTTTCTTCAGTtgagagagtaaaaaagaaaaagagggaagacaatagaaaataagaaagaaagacaggaagaatctccctccctctttgatctctttggtctgttttcttTGATCTCGCGCTGTAGACAGATAGTAGTAGATGGAGCGCGCGAAGCTGAGGCAGGGGGAGCAGGAGGACGCGGCGGCGGCAGCGGCAGTGGCGGGGGGGGAGCAGCACTCTCTGAACGGGCACTGCGAGGGCGGCCGGTCGAAGGTGGCCCGGTGTCGGGAGTCCCCCGGGGAAGCGTCCGGCAGCGGCGCGAGGACCCCCGGCCAGAGCGGCCACAGCTCCTCGGTGATGGAGAGCTGGAAGGAGGAGCGCACGCGGAGCGTGGAGGACAACGAGATGAGCCTCCCCAGCATCGCCGCTGCCTACACCACCATCCTCCGGGGGCTAGGAGAAGACCCCCAGAGACAGGGCTTACTGAAGACCCCCTGGAGAGCTGCCACTGCCATGCAGTTCTTCACCAAGGGCTACCAGGAGAAGATCATAGATGTTCTGAATGACGCCATTTTTGACGAGGATCACGATGAGATGGTGATTGTGAAGGACATCGACATGTTCTCCATGTGTGAACACCACTTGGTTCCCATCTTCGGCAGAgTTCATATAGGATATCTCCCAAACAAGAGGGTGCTGGGTCTCAGCAAACTAGCCAGGATTGTGGAGATCTACAGCAGGAGATTACAAGTTCAGGAACGACTGACCAAACAGATCGCAGTGGCCATCACTGAAGCTCTGCAGCCGGCCGGAGTGGGCGTGGTCATCGAGGCAACGCACATGTGCATGGTGATGAGGGGCGTGCAGAAGATGAACAGTAAGACGGTGACCAGCACCATGCTGGGGGTCTTCAGAGAGGACCCCAAGACCCGGGACGAGTTCCTCACGCTGATCCGGAGCTGAGGAGCATCATACAGCTCGTCcccctgtaacacacacttcCTCAACCACCGAGTCATCTCTAATCATCCGCCTTCACTGCAGGCTCCGCCCAGCCGAGCCCACCTGACCAATGGGCACGGACTTACCTCAGCTCCACCACCTCCCCCAGTAGTCTCTTTACGTACACGTGTacatgtgttgtgtgtgtgtgtgatattgtatgtattatgtgtgtttgtgagaaagagagcacaGTAAGTGTGCATCACTATAGGTAGTTTATTATAGTTATAAGGTGCTGTACGGTTCGGCAGGTGATTGATTGATATACAGGATGTGATTCAGTCTGTAGATGAAAAATCATcagatataatttaataatttgatttttaaCACCTGAAACCGTATTTTAATAATTAGACAGTcaaatattccactttaaaggagaagtccGGTGTGAAACTGACTTGGGTGACATAGTGAAACATgatggtaaatatatatatttacttatatttaatagcccaCACCTCGGTTCTGCTTCCCAAATACAGAGGTTTTAGCTCATGCTAAAACAAGccacaatgctagtgataggggcatagagttgccGATTCAAataaatggctatttttacattattatcaaACTTAAAGTAGATCCACACTTTAGTAGAACACATTAGTAGAATTATAAGAGCCCTGATATGTAAAATAAGACATTgggaactttaaaagtgcacagatatccttcaaaaaaatccattggcgagaactagacaaaatatatgtacacAGACATAAATTCTTCAAAAAAGTCAAATCAAGCAATCGCAAATAAAGCaa

Function

symbol description
gch1 Predicted to enable GTP binding activity; GTP cyclohydrolase I activity; and zinc ion binding activity. Predicted to be involved in tetrahydrobiopterin biosynthetic process. Predicted to act upstream of or within tetrahydrofolate biosynthetic process. Predicted to be active in cytoplasm. Is expressed in brain; dopaminergic neurons; trunk; and xanthophore. Human ortholog(s) of this gene implicated in BH4-deficient hyperphenylalaninemia B; bipolar disorder; dystonia; and dystonia 5. Orthologous to human GCH1 (GTP cyclohydrolase 1).

NR:

description
PREDICTED: GTP cyclohydrolase 1

GO: NA

KEGG:

id description
K01495 GCH1, folE; GTP cyclohydrolase IA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673309.1 True 1835 mRNA 0.48 6 40994368 41023646

Neighbor

gene id symbol gene type direction distance location
gnpnat1 gnpnat1,LOC107693128 coding downstream 135904 40844960 ~ 40858464 (-)
LOC103044545 NA coding downstream 332631 40651386 ~ 40661737 (-)
LOC111193263 NA coding downstream 343351 40631203 ~ 40651017 (-)
LOC103044257 LOC103044257,LOC108443405,LOC108269439,LOC107680760 coding downstream 367431 40623224 ~ 40626937 (-)
LOC103044720 fabp7a,fabp7,LOC108443406,LOC108269522,LOC107693085,LOC107723744 coding downstream 398467 40586730 ~ 40595901 (-)
wdhd1 wdhd1,LOC107583614 coding upstream 3224 41026870 ~ 41083608 (-)
gpr137c gpr137c coding upstream 84074 41107720 ~ 41151272 (-)
LOC103035710 NA coding upstream 210199 41233845 ~ 41252428 (-)
rtraf cunh14orf166,zgc:56576,LOC107693089,LOC107583671,LOC107751811,LOC107680004,LOC107725214 coding upstream 325209 41348855 ~ 41359462 (-)
LOC103044494 LOC107679991,LOC103143335,LOC107583669,LOC107564980,LOC103461506 coding upstream 438690 41462336 ~ 41470921 (-)
G87269 NA non-coding downstream 2751 40990768 ~ 40991617 (-)
G87271 NA non-coding downstream 28246 40909646 ~ 40966122 (-)
G87067 NA non-coding downstream 150958 40842730 ~ 40843410 (-)
G87034 NA non-coding downstream 268061 40725512 ~ 40726307 (-)
G87013 NA non-coding downstream 324047 40670058 ~ 40670321 (-)
G87301 NA non-coding upstream 97393 41121039 ~ 41121767 (-)
G87305 NA non-coding upstream 114221 41137867 ~ 41139853 (-)
G87304 NA non-coding upstream 115920 41139566 ~ 41203829 (-)
G87307 NA non-coding upstream 123840 41147486 ~ 41147967 (-)
G87303 NA non-coding upstream 168490 41192136 ~ 41194182 (-)
LOC103044865 NA other downstream 223867 40762672 ~ 40770501 (-)
LOC111193261 NA other downstream 458034 40533368 ~ 40536334 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other downstream 1135799 39808130 ~ 39858569 (-)
G86432 NA other downstream 2925316 37982874 ~ 38069052 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other downstream 3892787 36588904 ~ 37101581 (-)
LOC103040189 NA other upstream 749421 41773067 ~ 41804888 (-)

Expression


Co-expression Network