G87067


Basic Information

Item Value
gene id G87067
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 40842730 ~ 40843410 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU117271
cacctttatgtttttttattgagcaGATTGTTAATTCTCACaagcatttctttcttCCTACTGATATTCTCATCCCGTCCCATCCCATTCCTTTCTAATTCATCCTATTCCCAACATCACCCCCTCCCCCTTCAACAATTTCTTTCCCTTATTCAAACTCGAACGTCCAGCAAAAATAATAGTAGTTCAAGTATCAAAAGAGCATTATTGCAATACTGTCCCGCTGCAAATGCAAAATGCGTTAAATACtataaaactgcaaaaaaccTCATCAGTGCATACggctgaaaaaaaacatgaaaaaaactaaacaaaaccaaaatatTTATCAAACCCCGCCCCCGTCTCGACGAGCAGCCCCGCCCACCCCATCCTCTATACAAAAGTTtcagtatttacatttttaaaccccataaaaatgtaaaaaaaagaagaagttcACCGCAGCTAAAGCACCCAGAAACTAGAGCCTATCCGTTCTGTGCCGTCTGTACTTGCATATTCCCAAAATCTTCATCCTCCTCTAGTGTTCGCTTTAGACTccctgaaaaaacacaaaacacacacacacacctttTTTACACGTACAGCTACAGACAAATCAATACATGCATAAAAaacattcatatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117271 True 631 lncRNA 0.38 3 40842730 40843410

Neighbor

gene id symbol gene type direction distance location
LOC103044545 NA coding downstream 180993 40651386 ~ 40661737 (-)
LOC111193263 NA coding downstream 191713 40631203 ~ 40651017 (-)
LOC103044257 LOC103044257,LOC108443405,LOC108269439,LOC107680760 coding downstream 215793 40623224 ~ 40626937 (-)
LOC103044720 fabp7a,fabp7,LOC108443406,LOC108269522,LOC107693085,LOC107723744 coding downstream 246829 40586730 ~ 40595901 (-)
LOC103024062 NA coding downstream 389133 40448570 ~ 40453597 (-)
gnpnat1 gnpnat1,LOC107693128 coding upstream 1550 40844960 ~ 40858464 (-)
gch1 gch1,LOC107693131,LOC107723641,LOC107564951,LOC107583460,LOC107751761,LOC107680005 coding upstream 150958 40994368 ~ 41023646 (-)
wdhd1 wdhd1,LOC107583614 coding upstream 183460 41026870 ~ 41083608 (-)
gpr137c gpr137c coding upstream 264310 41107720 ~ 41151272 (-)
LOC103035710 NA coding upstream 390435 41233845 ~ 41252428 (-)
G87034 NA non-coding downstream 116423 40725512 ~ 40726307 (-)
G87013 NA non-coding downstream 172409 40670058 ~ 40670321 (-)
G87011 NA non-coding downstream 194702 40647114 ~ 40648028 (-)
G87010 NA non-coding downstream 214818 40627367 ~ 40627912 (-)
G87006 NA non-coding downstream 263387 40579109 ~ 40579343 (-)
G87271 NA non-coding upstream 66236 40909646 ~ 40966122 (-)
G87269 NA non-coding upstream 147358 40990768 ~ 40991617 (-)
G87301 NA non-coding upstream 277629 41121039 ~ 41121767 (-)
G87305 NA non-coding upstream 294457 41137867 ~ 41139853 (-)
G87304 NA non-coding upstream 296156 41139566 ~ 41203829 (-)
LOC103044865 NA other downstream 72229 40762672 ~ 40770501 (-)
LOC111193261 NA other downstream 306396 40533368 ~ 40536334 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other downstream 984161 39808130 ~ 39858569 (-)
G86432 NA other downstream 2773678 37982874 ~ 38069052 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other downstream 3741149 36588904 ~ 37101581 (-)
LOC103040189 NA other upstream 929657 41773067 ~ 41804888 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G171594 NA non-coding NC_047604.1 CM018550.1 25389583 ~ 25389871 (-)