G87011


Basic Information

Item Value
gene id G87011
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 40647114 ~ 40648028 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU117184
AATcggcccaaagagtctaaaagcggagagggtgcgcatttctaacgcagaaaatcgggccaaagagtctaaaagcggagagagtgcccaacaaaaaagttttggCACCCCTGGATTagatcattactcaaatattcactattctctgtatacctgtaactctacctcttcactactttactttaactgatgctctcaaacactttattaagagacaagaaattcaagtaattaactcttgatgagttcagcacagctgttaactgaaagcctgaattccaggtgactctaccttataaagctgactgagaaaatgatgTCCAAGATGtgaaaagctgtcatctaagcaccCATCTAGTACCCACTTATCAACACTGTAGCAGTCAGCTAGCAACCAGTTTGAAACATCATAACGACCCGCTAACAAAactgcaacaccatagcaaccacctagcaacaccacagcaagcaCCAAGCAACGACATAGTAACGGCCTGCCTTAGTAATTACCTGGTTCCAAACTGTAGCActtatttagtgtgtagttgacaacacctagcaaccacctggaataccatagtgATGTTCTTCGTCTTCTTGTTCGCCTTTTTTTTGTTCGTCTTCCTGTCtttcttattgttatttttcatattcgtattctttgtattttttttcttcttcttcgccttatttttctttgtcttcatgttttttcttattcttttttttcccctattcTTCTTATTTTTCGTATTCATATTCATCTTCTCtgtattcttcttctttgtcaTGTTTGTCTTCTTCATATACTTCTGCGTGTTCGTCTTCttcatctttttcttctgtctttatcttcttagata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117184 True 863 lncRNA 0.38 2 40647114 40648028

Neighbor

gene id symbol gene type direction distance location
LOC103044257 LOC103044257,LOC108443405,LOC108269439,LOC107680760 coding downstream 20177 40623224 ~ 40626937 (-)
LOC103044720 fabp7a,fabp7,LOC108443406,LOC108269522,LOC107693085,LOC107723744 coding downstream 51213 40586730 ~ 40595901 (-)
LOC103024062 NA coding downstream 193517 40448570 ~ 40453597 (-)
LOC103022189 bach2,LOC105015744,LOC106610754 coding downstream 366318 40241344 ~ 40280796 (-)
LOC103047828 rragd,LOC108435430,LOC107755772,LOC107583676,LOC107693082,LOC108270433 coding downstream 452171 40155635 ~ 40194943 (-)
LOC103044545 NA coding upstream 3358 40651386 ~ 40661737 (-)
gnpnat1 gnpnat1,LOC107693128 coding upstream 196932 40844960 ~ 40858464 (-)
gch1 gch1,LOC107693131,LOC107723641,LOC107564951,LOC107583460,LOC107751761,LOC107680005 coding upstream 346340 40994368 ~ 41023646 (-)
wdhd1 wdhd1,LOC107583614 coding upstream 378842 41026870 ~ 41083608 (-)
gpr137c gpr137c coding upstream 459692 41107720 ~ 41151272 (-)
G87010 NA non-coding downstream 19202 40627367 ~ 40627912 (-)
G87006 NA non-coding downstream 67771 40579109 ~ 40579343 (-)
G86995 NA non-coding downstream 86220 40556887 ~ 40560894 (-)
G86998 NA non-coding downstream 89871 40553743 ~ 40557243 (-)
G86996 NA non-coding downstream 90274 40554909 ~ 40556840 (-)
G87013 NA non-coding upstream 22030 40670058 ~ 40670321 (-)
G87034 NA non-coding upstream 77484 40725512 ~ 40726307 (-)
G87067 NA non-coding upstream 194702 40842730 ~ 40843410 (-)
G87271 NA non-coding upstream 261618 40909646 ~ 40966122 (-)
G87269 NA non-coding upstream 342740 40990768 ~ 40991617 (-)
LOC111193261 NA other downstream 110780 40533368 ~ 40536334 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other downstream 788545 39808130 ~ 39858569 (-)
G86432 NA other downstream 2578062 37982874 ~ 38069052 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other downstream 3545533 36588904 ~ 37101581 (-)
G85902 tfb1m other downstream 5352080 35288232 ~ 35295034 (-)
LOC103044865 NA other upstream 114644 40762672 ~ 40770501 (-)
LOC103040189 NA other upstream 1125039 41773067 ~ 41804888 (-)

Expression


Co-expression Network