G87010


Basic Information

Item Value
gene id G87010
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 40627367 ~ 40627912 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU117183
tgatgacatgtctctccaaaccatcactgattggtggaaacttcacactgtgtgtctctccactcttcctccagactctgatcccttgatttactttaaatgaaatgtaaaatttactgatgatcagtgatggtttggagagacatgtctgtcatctgctggtgttgatccactgtgttttattatcaagtctaaagtcagtgcagttttgttttcccacaaaatcttacagcacttcatatcttacagcttccctctgctactgacaacttttatagagatgcagatttcattttccagcaggacttggcacactgccaaaattaccaattggtcttattcaTAGACtctatatagctggacagagcatcgtctctcaaaagtgaagccaccacaggtcgggcgccccctgctgttcggctgcagaaagctgtgtaactccacccatccccataggtttcaatggcaaaacagacaactttcaatcacgttttttctaatatactgtaattctacctccattatttaaatgcagcagctagtgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117183 True 546 lncRNA 0.41 1 40627367 40627912

Neighbor

gene id symbol gene type direction distance location
LOC103044257 LOC103044257,LOC108443405,LOC108269439,LOC107680760 coding downstream 430 40623224 ~ 40626937 (-)
LOC103044720 fabp7a,fabp7,LOC108443406,LOC108269522,LOC107693085,LOC107723744 coding downstream 31466 40586730 ~ 40595901 (-)
LOC103024062 NA coding downstream 173770 40448570 ~ 40453597 (-)
LOC103022189 bach2,LOC105015744,LOC106610754 coding downstream 346571 40241344 ~ 40280796 (-)
LOC103047828 rragd,LOC108435430,LOC107755772,LOC107583676,LOC107693082,LOC108270433 coding downstream 432424 40155635 ~ 40194943 (-)
LOC111193263 NA coding upstream 3291 40631203 ~ 40651017 (-)
LOC103044545 NA coding upstream 23474 40651386 ~ 40661737 (-)
gnpnat1 gnpnat1,LOC107693128 coding upstream 217048 40844960 ~ 40858464 (-)
gch1 gch1,LOC107693131,LOC107723641,LOC107564951,LOC107583460,LOC107751761,LOC107680005 coding upstream 366456 40994368 ~ 41023646 (-)
wdhd1 wdhd1,LOC107583614 coding upstream 398958 41026870 ~ 41083608 (-)
G87006 NA non-coding downstream 48024 40579109 ~ 40579343 (-)
G86995 NA non-coding downstream 66473 40556887 ~ 40560894 (-)
G86998 NA non-coding downstream 70124 40553743 ~ 40557243 (-)
G86996 NA non-coding downstream 70527 40554909 ~ 40556840 (-)
G87002 NA non-coding downstream 75853 40548977 ~ 40551514 (-)
G87011 NA non-coding upstream 19202 40647114 ~ 40648028 (-)
G87013 NA non-coding upstream 42146 40670058 ~ 40670321 (-)
G87034 NA non-coding upstream 97600 40725512 ~ 40726307 (-)
G87067 NA non-coding upstream 214818 40842730 ~ 40843410 (-)
G87271 NA non-coding upstream 281734 40909646 ~ 40966122 (-)
LOC111193261 NA other downstream 91033 40533368 ~ 40536334 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other downstream 768798 39808130 ~ 39858569 (-)
G86432 NA other downstream 2558315 37982874 ~ 38069052 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other downstream 3525786 36588904 ~ 37101581 (-)
G85902 tfb1m other downstream 5332333 35288232 ~ 35295034 (-)
LOC103044865 NA other upstream 134760 40762672 ~ 40770501 (-)
LOC103040189 NA other upstream 1145155 41773067 ~ 41804888 (-)

Expression


Co-expression Network