LOC111193263


Basic Information

Item Value
gene id LOC111193263
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 40631203 ~ 40651017 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673297.1
CCCTAAGCTCTTCACTGTTTCCTCGGTGGAGATGATGAAAAAGCGTGAACCTCAGAGCAACACTGTTCTGGAGACCAAAGAGAAAATCGCTGGGGGAGAAATCGTAATTTCAGATTTTAAAAGAACGTCTCCGACAAGGATGGATGAGCTGGATGTGGAGGAGAATCCCAGCATCTCTGGAATTCCTGGAAATCAAAACCCAGAACTTGCTAGTTTAGAGCTTAATAGGCCAATCAGAGCGGAGGAACTCGTAAAGATTGAGACAGAAACAATTGAAACAGAGATAGTGATTGAAAATGCAGCTCCTCaaacagaaaagaagaaagatttTGATGTGGAATTGAAGGAAAAGGAAAGTGCTAAAGGGAAAACGTTGGAATTAGAAGAAATAGATAGAATAGTCGTGTCAGAGAAGATAAAGGATAAAAACGACGGCATATTGGAAGCGAATGAAAGAGTGATTGAAAGCGATGCCCCTGGAGAAGAGCTCAGGAGAGAGAGTTATATTCTGGCGGGTGTATACGCTCGAGCCCTGAAGGCAAAATCCCCAACCACTAAACACGTTTCCATCCAAGATCCAAAGCAGCAGGAACGATCTGTAGATCTGATTCCCTCCATCGTGATTCTACCATCTGAGACACCAACACATAAAGAAAGTGAGAAAATCGGGACGCCTGCCCCGGCAGCACCTGCAGGAACACCTGCTCCACCCACCTTTGTGCTGGACACCTGGGAGGATGAAGGAGTGGACTCGGAGGATGACAGCAGCTCCGTGTCCAGCTACGGCTCTGATCTCTCCGGCAGGAGAGGCTTTACTGCGAGCTCTCTCTCCGTCACAGAGCGTACGGGCAGTCTGCTGAGTGTGTACAGTGATGCGGGGGATTTTGGTAATGTGACGGTTCAGGGCTCTGTGGAGTTCGCTCTGATGTACAGTCCTCTGGGAGAACTGGTGATTATGGTGGAGCAGTGCCAGGACCTGGCCATCGCTAACCCACGCAAACAGCGCACTGACCCGTATGTGAAGACCTACCTCTATCCAGACAAGAGGAGCAAGAGGAAGACGTCTATAAAGAAGCGTACAGTGAACCCGGTGTATGTGGAGGCTCTGAGGTACAAAGTGAAGCGTGAAGAATTGCCCGGAAAGACTCTGAACTTGTCTGTGTGGCACAACGACTCTCTGGGCAGAAACGTGTTTCTGGGTCAGGTGGAGATCAATCTGAGGACGTGGGACTGGGGCCACGAGTCTCTCACCTGGTACAACCTCCAGCCCAAGACGGCTGATAATCCGGAGGCGCAGGAAAACCACGGGCTGCTGTGCGTCTCCCTGAAATACGTTCCCCCAGAGCCCAGAGGAGGTTCTAAGCTCGGTACCGGAGAGATCCACATCTGGCTGAGAGAAGCTCGGCAGCTCCATCGCCTCAGACCCCCGGGGGTGGACTCGTTCGTGaagtgttaCATGCTGCCGGACACCAGTAAGAAGAGTCGTCAGAAGACGCGTGTGGTGAAGAAGTCTCTGAATCCGGTGTATAATCACACCATGGTGTACGACGGCTTCAGGCCGGACGAGGTGCGCGAGGCCTGCTGTGAACTCACCGTCTGGGACAACAACAAACTCTCCAACCAGTTCCTCGGAGGAGTTCGCCTCAGCCTCGGCTCAGGTCAGAGTTATGGGAAGAAGGTGGACTGGATGGACTCGGTGAATGAGGAGGTGGAAATCTGGGAGAAAATGATGGCAAATGCGAACAGCTGGGTGGAGGCGGAGCTTCCACTGAGGGGTTCCATGACTCCCAGGAAATAAGAGGACATAGGTGAACTCAGGAATCTCCAGGAAAGTCAGTAATATGTGAGaattcataatatataatacataaaagtGGGATTGAGGCAATAAAAAACCTATACCAAACCTTTTAA

Function

GO: NA

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673297.1 True 1914 mRNA 0.50 10 40631203 40651017

Neighbor

gene id symbol gene type direction distance location
LOC103044257 LOC103044257,LOC108443405,LOC108269439,LOC107680760 coding downstream 4266 40623224 ~ 40626937 (-)
LOC103044720 fabp7a,fabp7,LOC108443406,LOC108269522,LOC107693085,LOC107723744 coding downstream 35302 40586730 ~ 40595901 (-)
LOC103024062 NA coding downstream 177606 40448570 ~ 40453597 (-)
LOC103022189 bach2,LOC105015744,LOC106610754 coding downstream 350407 40241344 ~ 40280796 (-)
LOC103047828 rragd,LOC108435430,LOC107755772,LOC107583676,LOC107693082,LOC108270433 coding downstream 436260 40155635 ~ 40194943 (-)
LOC103044545 NA coding upstream 369 40651386 ~ 40661737 (-)
gnpnat1 gnpnat1,LOC107693128 coding upstream 193943 40844960 ~ 40858464 (-)
gch1 gch1,LOC107693131,LOC107723641,LOC107564951,LOC107583460,LOC107751761,LOC107680005 coding upstream 343351 40994368 ~ 41023646 (-)
wdhd1 wdhd1,LOC107583614 coding upstream 375853 41026870 ~ 41083608 (-)
gpr137c gpr137c coding upstream 456703 41107720 ~ 41151272 (-)
G87010 NA non-coding downstream 3291 40627367 ~ 40627912 (-)
G87006 NA non-coding downstream 51860 40579109 ~ 40579343 (-)
G86995 NA non-coding downstream 70309 40556887 ~ 40560894 (-)
G86998 NA non-coding downstream 73960 40553743 ~ 40557243 (-)
G86996 NA non-coding downstream 74363 40554909 ~ 40556840 (-)
G87013 NA non-coding upstream 19041 40670058 ~ 40670321 (-)
G87034 NA non-coding upstream 74495 40725512 ~ 40726307 (-)
G87067 NA non-coding upstream 191713 40842730 ~ 40843410 (-)
G87271 NA non-coding upstream 258629 40909646 ~ 40966122 (-)
G87269 NA non-coding upstream 339751 40990768 ~ 40991617 (-)
LOC111193261 NA other downstream 94869 40533368 ~ 40536334 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other downstream 772634 39808130 ~ 39858569 (-)
G86432 NA other downstream 2562151 37982874 ~ 38069052 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other downstream 3529622 36588904 ~ 37101581 (-)
G85902 tfb1m other downstream 5336169 35288232 ~ 35295034 (-)
LOC103044865 NA other upstream 111655 40762672 ~ 40770501 (-)
LOC103040189 NA other upstream 1122050 41773067 ~ 41804888 (-)

Expression


Co-expression Network