G87304


Basic Information

Item Value
gene id G87304
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 41139566 ~ 41203829 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU117589
gaggaagatggatgatcacaagacatcaaaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaaaaactgtgattaaaaaccaaccaggattattccaccaaatattgatttctcttaaaactttatgaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcatcttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117589 True 260 lncRNA 0.35 2 41139566 41203829

Neighbor

gene id symbol gene type direction distance location
wdhd1 wdhd1,LOC107583614 coding downstream 55958 41026870 ~ 41083608 (-)
gch1 gch1,LOC107693131,LOC107723641,LOC107564951,LOC107583460,LOC107751761,LOC107680005 coding downstream 115920 40994368 ~ 41023646 (-)
gnpnat1 gnpnat1,LOC107693128 coding downstream 281102 40844960 ~ 40858464 (-)
LOC103044545 NA coding downstream 477829 40651386 ~ 40661737 (-)
LOC111193263 NA coding downstream 488549 40631203 ~ 40651017 (-)
LOC103035710 NA coding upstream 30016 41233845 ~ 41252428 (-)
rtraf cunh14orf166,zgc:56576,LOC107693089,LOC107583671,LOC107751811,LOC107680004,LOC107725214 coding upstream 145026 41348855 ~ 41359462 (-)
LOC103044494 LOC107679991,LOC103143335,LOC107583669,LOC107564980,LOC103461506 coding upstream 258507 41462336 ~ 41470921 (-)
gpr135 gpr135,LOC107679990,LOC107568507,LOC107564991,LOC107693091 coding upstream 552903 41756732 ~ 41759087 (-)
LOC103028306 lrfn5,LOC108443922,LOC107682216,LOC107572671 coding upstream 1305293 42509122 ~ 42655749 (-)
G87301 NA non-coding downstream 17799 41121039 ~ 41121767 (-)
G87269 NA non-coding downstream 147949 40990768 ~ 40991617 (-)
G87271 NA non-coding downstream 173444 40909646 ~ 40966122 (-)
G87067 NA non-coding downstream 296156 40842730 ~ 40843410 (-)
G87034 NA non-coding downstream 413259 40725512 ~ 40726307 (-)
G87343 nid2,wu:fb77a09,LOC107564977,LOC107680002 non-coding upstream 111931 41315760 ~ 41327496 (-)
G87360 NA non-coding upstream 193928 41397757 ~ 41503593 (-)
G87362 LOC108441856 non-coding upstream 200187 41404016 ~ 41407221 (-)
G87371 NA non-coding upstream 223971 41427800 ~ 41428860 (-)
G87375 LOC107679998,LOC107564960 non-coding upstream 242314 41446143 ~ 41452705 (-)
LOC103044865 NA other downstream 369065 40762672 ~ 40770501 (-)
LOC111193261 NA other downstream 603232 40533368 ~ 40536334 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other downstream 1280997 39808130 ~ 39858569 (-)
G86432 NA other downstream 3070514 37982874 ~ 38069052 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other downstream 4037985 36588904 ~ 37101581 (-)
LOC103040189 NA other upstream 569238 41773067 ~ 41804888 (-)

Expression


Co-expression Network